TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.

miRNA Family

miRNA
Species
Sequence
aly-miR159c-3p
Arabidopsis lyrata
UUUGGAUUGAAGGGAGCUCCU
aly-miR319a-3p
Arabidopsis lyrata
UUGGACUGAAGGGAGCUCCCU
aly-miR319a-5p
Arabidopsis lyrata
AGAGCUUCCUUGAGUCCAUUC
aly-miR319b-3p
Arabidopsis lyrata
UUGGACUGAAGGGAGCUCCCU
aly-miR319b-5p
Arabidopsis lyrata
AGAGCUUUCUUCGGUCCACUC
aly-miR319c-3p
Arabidopsis lyrata
UUGGACUGAAGGGAGCUCCUU
aly-miR319d-3p
Arabidopsis lyrata
UUGGACUGAAGGGAGCUCCUU
ath-miR159c
Arabidopsis thaliana
UUUGGAUUGAAGGGAGCUCCU
ath-miR319a
Arabidopsis thaliana
UUGGACUGAAGGGAGCUCCCU
ath-miR319b
Arabidopsis thaliana
UUGGACUGAAGGGAGCUCCCU
ath-miR319c
Arabidopsis thaliana
UUGGACUGAAGGGAGCUCCUU
atr-miR319a
Amborella trichopoda
UUGGACUGAAGGGAGCUCCC
atr-miR319b
Amborella trichopoda
UUUGGACUGAAGGGAGCUCCU
atr-miR319c
Amborella trichopoda
UUGGACUGAAGGGAGCUCCC
atr-miR319d
Amborella trichopoda
UUUGGACUGAAGGGAGCUCCU
atr-miR319e
Amborella trichopoda
UUUGGACUGAAGGGAGCUCCU
bdi-miR319b-3p
Brachypodium distachyon
UUGGACUGAAGGGUGCUCCCU
bdi-miR319b-5p
Brachypodium distachyon
AGAGCUCUCUUCAGUCCACUC
bol-miR319a
Brassica oleracea
UUGGACUGAAGGGAGCUCCCU
bol-miR319b
Brassica oleracea
UUGGACUGAAGGGAGCUCCCU
bra-miR319a
Brassica rapa
UUGGACUGAAGGGAGCUCCCU
bra-miR319b
Brassica rapa
UUGGACUGAAGGGAGCUCCCU
bra-miR319c
Brassica rapa
UUGGACUGAAGGGAACUCCCU
bra-miR319d
Brassica rapa
UUGGACUGAAGGGAGCUCCCU
bra-miR319e
Brassica rapa
UUGGACUGAAGGGAGCUCCUU
bra-miR319f
Brassica rapa
UUGGACUGAAGGGAGCUCCUUC
bra-miR319g
Brassica rapa
UUGGACUGAAGGGAGCUCCUUC
bra-miR319h
Brassica rapa
UUGGACUGAAGGGAGCUCCUUC
cpa-miR159b
Carica papaya
CUUGGAUUGAAGGGAGCUCC
cpa-miR319
Carica papaya
AUUGGACUGAAGGGAGCUCC
cru-miR319a
Capsella rubella
UUUGGACUGAAGGGAGCUCCU
cru-miR319b
Capsella rubella
UUGGACUGAAGGGAGCUCCCU
cru-miR319c
Capsella rubella
UUGGACUGAAGGGAGCUCCCU
csi-miR159b-5p
Citrus sinensis
AGCUGCCGACUCAUUCAUUCA
csi-miR159c-3p
Citrus sinensis
CUUGGACUGAAGGGAGCUCCC
csi-miR159c-5p
Citrus sinensis
GAGCUUUCUUCGGUCCACUU
csi-miR159d
Citrus sinensis
UUUGGACUGAAGGGAGCUCCU
esa-miR319a
Eutrema salsugineum
UUGGACUGAAGGGAGCUCCUU
esa-miR319b
Eutrema salsugineum
UUGGACUGAAGGGAGCUCCCU
esa-miR319c
Eutrema salsugineum
UUGGACUGAAGGGAGCUCCCU
fve-miR159c
Fragaria vesca
AUUGGAUUGAAGGGAGCUCCC
fve-miR319
Fragaria vesca
UUUGGACUGAAGGGAGCUCCU
gma-miR156aa
Glycine max
AUUGGAGUGAAGGGAGCU
gma-miR156z
Glycine max
AUUGGAGUGAAGGGAGCU
gma-miR159b-3p
Glycine max
AUUGGAGUGAAGGGAGCUCCA
gma-miR159c
Glycine max
AUUGGAGUGAAGGGAGCUCCG
gma-miR159f-3p
Glycine max
AUUGGAGUGAAGGGAGCUCCA
gma-miR319a
Glycine max
UUGGACUGAAGGGAGCUCCC
gma-miR319b
Glycine max
UUGGACUGAAGGGAGCUCCC
gma-miR319c
Glycine max
UUGGACUGAAGGGAGCUCCU
gma-miR319d
Glycine max
UGGACUGAAGGGGAGCUCCUUC
gma-miR319e
Glycine max
UUGGACUGAAGGGAGCUCCC
gma-miR319g
Glycine max
UUGGACUGAAGGGAGCUCCUUC
gma-miR319h
Glycine max
UUGGACUGAAGGGAGCUCCCU
gma-miR319i
Glycine max
UUGGACUGAAGGGGAGCUCCUUC
gma-miR319j
Glycine max
UUGGACUGAAGGGAGCUCCCU
gma-miR319k
Glycine max
UUGGACUGAAGGGAGCUCCCU
gma-miR319l
Glycine max
UUGGACUGAAGGGAGCUCCUUC
gma-miR319m
Glycine max
UUGGACUGAAGGGAGCUCCCU
gma-miR319n
Glycine max
UUUGGACCGAAGGGAGCCCCU
gma-miR319o
Glycine max
UGGACUGAAGGGGAGCUCCUUC
gma-miR319p
Glycine max
UUUUGGACUGAAGGGAGCUCC
gma-miR319q
Glycine max
UGGACUGAAGGGAGCUCCUUC
lus-miR319a
Linum usitatissimum
UUGGACUGAAGGGAGCUCCCU
lus-miR319b
Linum usitatissimum
UUGGACUGAAGGGAGCUCCC
mac-miR159c
Musa acuminata
CUUGGAUUGAAGGGAGCUCC
mac-miR159f
Musa acuminata
CUUGGAUUGAAGGGAGCUCC
mac-miR319a
Musa acuminata
UUGGACUGAAGGGAGCUCCCU
mac-miR319b
Musa acuminata
UUGGACUGAAGGGAGCUCCCU
mac-miR319c
Musa acuminata
UUGGACUGAAGGGAGCUCCCU
mac-miR319d
Musa acuminata
UUGGACUGAAGGGAGCUCCCU
mac-miR319e
Musa acuminata
UUGGACUGAAGGGAGCUCCCU
mac-miR319f
Musa acuminata
CUUGGACUGAAGGGAGCUCCC
mac-miR319g
Musa acuminata
UUGGACUGAAGGGAGCUCCC
mac-miR319h
Musa acuminata
CUUGGACUGAAGGGAGCUCCC
mac-miR319i
Musa acuminata
CUUGGACUGAAGGGAGCUCCC
mac-miR319j
Musa acuminata
CUUGGACUGAAGGGAGCUCCC
mac-miR319k
Musa acuminata
CUUGGACUGAAGGGAGCUCCC
mdm-miR159a
Malus domestica
CUUGGAUUGAAGGGAGCUCC
mdm-miR159b
Malus domestica
CUUGGAUUGAAGGGAGCUCC
mdm-miR319a
Malus domestica
UUGGACUGAAGGGAGCUCCCU
mdm-miR319b-3p
Malus domestica
UUGGACUGAAGGGAGCUCCCU
mdm-miR319b-5p
Malus domestica
GAGCUUUCUUCAGUCCACUC
mdm-miR319c-5p
Malus domestica
GAGCUCUUCUUCAGUCCAGUCC
mdm-miR319e
Malus domestica
GAGCUUUCUUCAGUCCACUC
mdm-miR319f
Malus domestica
GAGCUUUCUUCAGUCCACUC
mdm-miR319g
Malus domestica
GAGCUUUCUUCAGUCCACUC
mdm-miR319h
Malus domestica
GAGCUCUUCUUCAGUCCAGUCC
mes-miR319a
Manihot esculenta
UUGGACUGAAGGGAGCUCCCU
mes-miR319b
Manihot esculenta
UUGGACUGAAGGGAGCUCCCU
mes-miR319c
Manihot esculenta
UUGGACUGAAGGGAGCUCCCU
mes-miR319d
Manihot esculenta
UUGGACUGAAGGGAGCUCCCU
mes-miR319e
Manihot esculenta
UUGGACUGAAGGGAGCUCCCU
mes-miR319f
Manihot esculenta
AUUGGACUGAAGGGAGCUCC
mes-miR319g
Manihot esculenta
UUGGACUGAAGGGAGCUCCUU
mes-miR319h
Manihot esculenta
CUUGGACUGAAGGGAGCUCCU
mpo-miR319-b3.0r1-16464
Marchantia polymorpha
CUUGGACUGAAGGGAGCUCCC
mtr-miR159b
Medicago truncatula
AUUGGAGUGAAGGGAGCUCCA
mtr-miR319a-3p
Medicago truncatula
UUGGACUGAAGGGAGCUCCC
mtr-miR319a-5p
Medicago truncatula
AGAGCUUCCUUCAGUCCACUC
mtr-miR319b-3p
Medicago truncatula
UUGGACUGAAGGGAGCUCCC
mtr-miR319b-5p
Medicago truncatula
GAGCUUUCUUUAGUCCACUCA
mtr-miR319c-3p
Medicago truncatula
UUGGACUGAAGGGAGCUCCCA
mtr-miR319d-3p
Medicago truncatula
UUGGACUGAAGGGAGCUCCCU
mtr-miR319d-5p
Medicago truncatula
AGAGCUCUCUUCAGUCCACUC
osa-miR159d
Oryza sativa
AUUGGAUUGAAGGGAGCUCCG
osa-miR159e
Oryza sativa
AUUGGAUUGAAGGGAGCUCCU
osa-miR319a-3p
Oryza sativa
ACUGGAUGACGCGGGAGCUAA
osa-miR319a-3p.2-3p
Oryza sativa
UUGGACUGAAGGGUGCUCCC
osa-miR319a-5p
Oryza sativa
AGCUGCCGAAUCAUCCAUUCA
osa-miR319b
Oryza sativa
UUGGACUGAAGGGUGCUCCC
pha-miR319
Panicum hallii
UUGGACUGAAGGGUGCUCCCU
ppe-miR319a
Prunus persica
UUGGACUGAAGGGAGCUCCC
ppe-miR319b
Prunus persica
UAGCUGCCGAGUCAUUCAUCCA
ppt-miR319a
Physcomitrella patens
CUUGGACUGAAGGGAGCUCC
ppt-miR319b
Physcomitrella patens
CUUGGACUGAAGGGAGCUCC
ppt-miR319c
Physcomitrella patens
CUUGGACUGAAGGGAGCUCCC
ppt-miR319d-3p
Physcomitrella patens
CUUGGACUGAAGGGAGCUCCC
ppt-miR319d-5p.1
Physcomitrella patens
GAGCUUUCUUCGGUCCAAUA
ppt-miR319e
Physcomitrella patens
CUUGGACUGAAGGGAGCUCCC
ptc-miR159d
Populus trichocarpa
CUUGGAUUGAAGGGAGCUCCU
ptc-miR159e
Populus trichocarpa
CUUGGGGUGAAGGGAGCUCCU
ptc-miR319a
Populus trichocarpa
UUGGACUGAAGGGAGCUCCC
ptc-miR319b
Populus trichocarpa
UUGGACUGAAGGGAGCUCCC
ptc-miR319c
Populus trichocarpa
UUGGACUGAAGGGAGCUCCC
ptc-miR319d
Populus trichocarpa
UUGGACUGAAGGGAGCUCCC
ptc-miR319e
Populus trichocarpa
UUGGACUGAAGGGAGCUCCU
ptc-miR319f
Populus trichocarpa
UUGGACUGAAGGGAGCUCCU
ptc-miR319g
Populus trichocarpa
UUGGACUGAAGGGAGCUCCU
ptc-miR319h
Populus trichocarpa
UUGGACUGAAGGGAGCUCCU
ptc-miR319i
Populus trichocarpa
UUGGGCUGAAGGGAGCUCCC
pvi-miR319a
Panicum virgatum
UUGGACUGAAGGGUGCUCCCU
pvi-miR319b
Panicum virgatum
UUGGACUGAAGGGUGCUCCCU
pvi-miR319c
Panicum virgatum
AUUGGAUGGCGCGGGAGCUAA
pvu-miR319c
Phaseolus vulgaris
UUGGACUGAAGGGAGCUCCUU
rco-miR319a
Ricinus communis
UUGGACUGAAGGGAGCUCCCU
rco-miR319b
Ricinus communis
UUGGACUGAAGGGAGCUCCCU
rco-miR319c
Ricinus communis
UUGGACUGAAGGGAGCUCCCU
rco-miR319d
Ricinus communis
UUGGACUGAAGGGAGCUCCUU
sbi-miR159b
Sorghum bicolor
CUUGGAUUGAAGGGAGCUCCU
sbi-miR319a
Sorghum bicolor
UUGGACUGAAGGGUGCUCCC
sbi-miR319b
Sorghum bicolor
UUGGACUGAAGGGUGCUCCC
sly-miR319a
Solanum lycopersicum
CUUGGACUGAAGGGAGCUCC
sly-miR319b
Solanum lycopersicum
UUGGACUGAAGGGAGCUCCCU
sly-miR319c-3p
Solanum lycopersicum
UUGGACUGAAGGGAGCUCCUU
sly-miR319c-5p
Solanum lycopersicum
AGAGCUUCCUUCAGCCCACUC
sly-miR319d
Solanum lycopersicum
AGGAAACUGUUUAGUCCAACC
smo-miR159
Selaginella moellendorffii
CUUGGAUUGAAGGGAGCUCCC
smo-miR319
Selaginella moellendorffii
UGCUGCCGACUCAUGCAUCC
stu-miR319-3p
Solanum tuberosum
UUGGACUGAAGGGUUCCCUUC
stu-miR319-5p
Solanum tuberosum
AGGAAACUGUUUAGUCCAACC
stu-miR319a-3p
Solanum tuberosum
UUGGACUGAAGGGAGCUCCCU
stu-miR319a-5p
Solanum tuberosum
AGAGCUUUCUUCGGUCCACAC
stu-miR319b
Solanum tuberosum
UUGGACUGAAGGGAGCUCCU
tae-miR319
Triticum aestivum
UUGGACUGAAGGGAGCUCCCU
tcc-miR319
Theobroma cacao
UUUGGACUGAAGGGAGCUCCU
vvi-miR319b
Vitis vinifera
UUGGACUGAAGGGAGCUCCCU
vvi-miR319c
Vitis vinifera
UUGGACUGAAGGGAGCUCCCU
vvi-miR319e
Vitis vinifera
UUUGGACUGAAGGGAGCUCCU
vvi-miR319f
Vitis vinifera
UUGGACUGAAGGGAGCUCCCU
vvi-miR319g
Vitis vinifera
UUGGACUGAAGGGAGCUCCCA
zma-miR159c-3p
Zea mays
CUUGGAUUGAAGGGAGCUCCU
zma-miR159d-3p
Zea mays
CUUGGAUUGAAGGGAGCUCCU
zma-miR319a-3p
Zea mays
UUGGACUGAAGGGUGCUCCC
zma-miR319a-5p
Zea mays
GAGCUCUCUUCAGUCCACUC
zma-miR319b-3p
Zea mays
UUGGACUGAAGGGUGCUCCC
zma-miR319b-5p
Zea mays
AGAGCGUCCUUCAGUCCACUC
zma-miR319c-3p
Zea mays
UUGGACUGAAGGGUGCUCCC
zma-miR319c-5p
Zea mays
GAGCUCUCUUCAGUCCACUC
zma-miR319d-3p
Zea mays
UUGGACUGAAGGGUGCUCCC
zma-miR319d-5p
Zea mays
AGAGCGUCCUUCAGUCCACUC
zma-miR482-5p
Zea mays
UGGGAGAUGAAGGAGCCUU
zos-miR319
Zostera marina
UUGGACUGAAGGGUGCUCCC