TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

osa-miR319a-3p

Organism

Oryza sativa

Species

Mature miRNA Sequence(5'-3')

ACUGGAUGACGCGGGAGCUAA

miRBase

Precursor miRNA Sequence(5'-3')

UGUGUAAGAAGAGAGCUCUCUUCAGUCCACUCUCAGAUGGCUGUAGGGUUUUAUUAGCUGCCGAAUCAUCCAUUCACCUACCAAGAAAGUUGCAGGAGUGUAUCUCUUGGUAGCGGACUGGAUGACGCGGGAGCUAAAAUUUAGCUCUGCGCCGUUUGUGGUUGGACUGAAGGGUGCUCCCUUGCUCAAGC

miRBase

Precursor miRNA Structure(5'-3') 

---  U     AA A    U            C  U        U        --UUA      G   AA       U  AC         AAGU    G 
   UG GUAAG  G GAGC CUCUUCAGUCCA UC CAGAUGGC GUAGGGUU     UUAGCU CCG  UCAUCCA UC  CUACCAAGA    UGCA G
   || |||||  | |||| |||||||||||| || |||||||| ||||||||     |||||| |||  ||||||| ||  |||||||||    ||||  
   AC CGUUC  C CUCG GGGAAGUCAGGU GG GUUUGCCG CGUCUCGA     AAUCGA GGC  AGUAGGU AG  GAUGGUUCU    AUGU U
CGA  U     -- -    U            U  U        -        UUUAA      G   GC       C  GC         --CU    G

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

pvi-miR319c         AUUGGAUGGCGCGGGAGCUAA
osa-miR319a-3p      ACUGGAUGACGCGGGAGCUAA
                    * ****** ************