TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

csi-miR159c-5p

Organism

Citrus sinensis

Species

Mature miRNA Sequence(5'-3')

GAGCUUUCUUCGGUCCACUU

miRBase

Precursor miRNA Sequence(5'-3')

AUUAAGCUGGGAGCUUUCUUCGGUCCACUUAUGGGUGGCAAUAGGAUUUAAUUAGCUGCUGACUCAUUCAUCCAAAUACUGAGUAAAGGGUCGAAAUGGAUACCCAGUAAAUGAGUGAAUGAUGCGGGAGACAAAUUGAAUCUUAAGCUUCCUGUGCUUGGACUGAAGGGAGCUCCCAUUGCUCGCUAA

miRBase

Precursor miRNA Structure(5'-3') 

--AUUA   --                    CU      U   AA            A -  G   AC        C  AA     A  AAAGG   GA 
      AGC  UGGGAGCUUUCUUCGGUCCA  UAUGGG GGC  UAGGAUUUAAUU G CU CUG  UCAUUCAU CA  UACUG GU     GUC  A
      |||  ||||||||||||||||||||  |||||| |||  |||||||||||| | || |||  |||||||| ||  ||||| ||     |||   
      UCG  ACCCUCGAGGGAAGUCAGGU  GUGUCC UCG  AUUCUAAGUUAA C GA GGC  AGUAAGUG GU  AUGAC CA     UAG  G
AAUCGC   UU                    UC      U   -A            A A  G   GU        A  AA     C  -----   GU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

stu-miR319a-5p      AGAGCUUUCUUCGGUCCACAC
csi-miR159c-5p      -GAGCUUUCUUCGGUCCACUU
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