TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

stu-miR319a-5p

Organism

Solanum tuberosum

Species

Mature miRNA Sequence(5'-3')

AGAGCUUUCUUCGGUCCACAC

miRBase

Precursor miRNA Sequence(5'-3')

AGAGCUUUCUUCGGUCCACACAUGGGGGGCGAUAGGGUUCAAUUUGCUGCCGACUCAUUCAUCCAAAUGUUGAGGUCUUGAUAGUCGAAUGCCACCUCAGCAACUGAGUGAAUGAAGCGGGAGUACAAGUUGAGUCUUGAGCUUCCUGUACUUGGACUGAAGGGAGCUCCCU

miRBase

Precursor miRNA Structure(5'-3') 

--A                 CAC         GA              --  G   AC        C  AA         ----C      
   GAGCUUUCUUCGGUCCA   AUGGGGGGC  UAGGGUUCAAUUUG  CU CCG  UCAUUCAU CA  UGUUGAGGU     UUGAU 
   |||||||||||||||||   |||||||||  ||||||||||||||  || |||  |||||||| ||  |||||||||     |||| A
   CUCGAGGGAAGUCAGGU   UGUCCUUCG  GUUCUGAGUUGAAC  GA GGC  AGUAAGUG GU  ACGACUCCA     AGCUC 
UCC                 UCA         -A              AU  G   GA        A  CA         CCGUA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

stu-miR319a-5p      AGAGCUUUCUUCGGUCCACAC
csi-miR159c-5p      -GAGCUUUCUUCGGUCCACUU
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