TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

stu-miR319-5p

Organism

Solanum tuberosum

Species

Mature miRNA Sequence(5'-3')

AGGAAACUGUUUAGUCCAACC

miRBase

Precursor miRNA Sequence(5'-3')

AGGAAACUGUUUAGUCCAACCCAAGGUGGGUUAUUGGAACUGAUCUUUGCUGCUGAAUCAUUGGCUCAUGAGCAUGUCAAAGAAGAUGAAUAACAUCCUGGACAUGUUCUUGCUCCAAUGAUGCAGGAGCUGAGCUCGGUUUUUCACUGCCUUUUCUUGGACUGAAGGGUUCCCUUC

miRBase

Precursor miRNA Structure(5'-3') 

--   A    G          CCC       GUUAUU        U   U   G   A        CU  U         AA  AA    A 
  AGG AACU UUUAGUCCAA   AAGGUGG      GGAACUGA CUU GCU CUG AUCAUUGG  CA GAGCAUGUC  AG  GAUG A
  ||| |||| ||||||||||   |||||||      |||||||| ||| ||| ||| ||||||||  || |||||||||  ||  |||| U
  UCC UUGG AAGUCAGGUU   UUCCGUC      UUUUGGCU GAG CGA GAC UAGUAACC  GU CUUGUACAG  UC  CUAC C
CU   C    G          CUU       ---ACU        C   U   G   G        UC  U         -G  --    A

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

stu-miR319-5p      AGGAAACUGUUUAGUCCAACC
sly-miR319d        AGGAAACUGUUUAGUCCAACC
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