TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

mtr-miR319a-5p

Organism

Medicago truncatula

Species

Mature miRNA Sequence(5'-3')

AGAGCUUCCUUCAGUCCACUC

miRBase

Precursor miRNA Sequence(5'-3')

AUUAUUAGAAAUAGAUGAAGAGAGCUUCCUUCAGUCCACUCAUGGAAGGGUAAGGGGUUUGAAUUACCUGCUGACUCAUUGAUUCAAACACAAUAGACAAUUAUGGGGUUAUGCUAUUGUGAAUGUGUGAAUGAUGCAGGAGGUGAAUUUCUUCCUUUUCUUCUUUGCUUGGACUGAAGGGAGCUCCCUUUUUCUAUUUAUAAAUUA

miRBase

Precursor miRNA Structure(5'-3') 

AUUAUUAG       U    A                 CU  U       U      UUU   --      G   AC     G  U  AA        A  AUUAU 
        AAAUAGA GAAG GAGCUUCCUUCAGUCCA  CA GGAAGGG AAGGGG   GAA  UUACCU CUG  UCAUU AU CA  CACAAUAG CA     G
        ||||||| |||| |||||||||||||||||  || ||||||| ||||||   |||  |||||| |||  ||||| || ||  |||||||| ||      
        UUUAUCU UUUC CUCGAGGGAAGUCAGGU  GU UCUUCUU UUCCUU   CUU  AGUGGA GAC  AGUAA UG GU  GUGUUAUC GU     G
AUUAAAUA       U    C                 UC  U       -      ---   UA      G   GU     G  U  AA        -  AUUGG

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

mdm-miR319b-5p        -GAGCUUU-CUUCAGUCCACUC-
mtr-miR319b-5p        -GAGCUUU-CUUUAGUCCACUCA
mdm-miR319e           -GAGCUUU-CUUCAGUCCACUC-
mdm-miR319c-5p        -GAGCUCUUCUUCAGUCCAGUCC
mdm-miR319h           -GAGCUCUUCUUCAGUCCAGUCC
bdi-miR319b-5p        AGAGCUCU-CUUCAGUCCACUC-
mtr-miR319d-5p        AGAGCUCU-CUUCAGUCCACUC-
zma-miR319a-5p        -GAGCUCU-CUUCAGUCCACUC-
zma-miR319c-5p        -GAGCUCU-CUUCAGUCCACUC-
mdm-miR319g           -GAGCUUU-CUUCAGUCCACUC-
mdm-miR319f           -GAGCUUU-CUUCAGUCCACUC-
mtr-miR319a-5p        AGAGCUUC-CUUCAGUCCACUC-
aly-miR319b-5p        AGAGCUUU-CUUCGGUCCACUC-
ppt-miR319d-5p.1      -GAGCUUU-CUUCGGUCCAAUA-
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