TarDB

Precursor miRNA Sequence(5'-3')

AUCUUAGAGAUAGUUUGAAGUGAGCUUUCUUCAGUCCACUCAUGGAAGGGCAAAGGGUUUGAAUUAGCUGCCGACUCAUUCAUUCAAACUCAGUAGAAAUGGAGUGGAUAUUUCUACUGUGAAUGUGUGAAUGAUGCGGGAGAUAACUUCAUUCUUUUCUUCUCUGUGCUUGGACUGAAGGGAGCUCCCUUUUACUGUCUUCUUUGU

miRBase

Precursor miRNA Structure(5'-3')

AUCUUA        UU    U                 CU      A   C      UU    -   G  G   AC        U  AA U           GA 
      GAGAUAGU  GAAG GAGCUUUCUUCAGUCCA  CAUGGA GGG AAAGGG  UGAA UUA CU CCG  UCAUUCAU CA  C CAGUAGAAAUG  G
      ||||||||  |||| |||||||||||||||||  |||||| ||| ||||||  |||| ||| || |||  |||||||| ||  | |||||||||||  U
      UUCUGUCA  UUUC CUCGAGGGAAGUCAGGU  GUGUCU UUC UUUUCU  ACUU AAU GA GGC  AGUAAGUG GU  G GUCAUCUUUAU  A
UGUUUC        -U    C                 UC      C   -      -U    C   A  G   GU        U  AA U           AG

mdm-miR319b-5p -GAGCUUU-CUUCAGUCCACUC- mtr-miR319b-5p -GAGCUUU-CUUUAGUCCACUCA mdm-miR319e -GAGCUUU-CUUCAGUCCACUC- mdm-miR319c-5p -GAGCUCUUCUUCAGUCCAGUCC mdm-miR319h -GAGCUCUUCUUCAGUCCAGUCC bdi-miR319b-5p AGAGCUCU-CUUCAGUCCACUC- mtr-miR319d-5p AGAGCUCU-CUUCAGUCCACUC- zma-miR319a-5p -GAGCUCU-CUUCAGUCCACUC- zma-miR319c-5p -GAGCUCU-CUUCAGUCCACUC- mdm-miR319g -GAGCUUU-CUUCAGUCCACUC- mdm-miR319f -GAGCUUU-CUUCAGUCCACUC- mtr-miR319a-5p AGAGCUUC-CUUCAGUCCACUC- aly-miR319b-5p AGAGCUUU-CUUCGGUCCACUC- ppt-miR319d-5p.1 -GAGCUUU-CUUCGGUCCAAUA- ***** *** ***** *

TarDB: A miRNA Target Database in Plants.

TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.

miRNA ID

Organism

Mature miRNA Sequence(5'-3')

Precursor miRNA Sequence(5'-3')

Precursor miRNA Structure(5'-3')

Homologous Mature miRNAs miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.