TarDB

Precursor miRNA Sequence(5'-3')

UAAUAGUUUUCAUGGAGCAGUAAAUAUUGUUGGAAUCAUGUGUAUUAUGUGUUCUUAGAGAUGGUUUAAGUGAGCUUUCUUCAGUCCACUCACGGAAGGGCAAAGGGUUUGAAUUAGCUGCCGACUCAUUCAUUCAAACUCAGUAGAAAAGGAGUGGAUAUUUCUACUGCGAAUGUGUGAAUGAUGCGGGAGAUAAAUUUCAUUCUUUUCUUCUCUGUGCUUGGACUGAAGGGAGCUCCCUUUUACUAUCUUCUUUGUUGUAUACAUUGUUUACCUAACCAUUUCUUUUCAUGAUGUAUUUAGUGAUC

miRBase

Precursor miRNA Structure(5'-3')

-----UAAUAGUUU        C  U    AUU     ---   C        UAUGUGUU UU   -      UU   U                 CU      A   C      UU    --   G  G   AC        U  AA U         AGGA 
              UCAUGGAG AG AAAU   GUUGG   AAU AUGUGUAU        C  AGA GAUGGU  AAG GAGCUUUCUUCAGUCCA  CACGGA GGG AAAGGG  UGAA  UUA CU CCG  UCAUUCAU CA  C CAGUAGAAA    G
              |||||||| || ||||   |||||   ||| ||||||||        |  ||| ||||||  ||| |||||||||||||||||  |||||| ||| ||||||  ||||  ||| || |||  |||||||| ||  | |||||||||    U
              AGUACUUU UC UUUA   CAAUC   UUG UACAUAUG        G  UCU CUAUCA  UUC CUCGAGGGAAGUCAGGU  GUGUCU UUC UUUUCU  ACUU  AAU GA GGC  AGUAAGUG GU  G GUCAUCUUU    A
CUAGUGAUUUAUGU        -  -    --C     CAU   U        ------UU UU   U      UU   C                 UC      C   -      -U    UA   A  G   GU        U  AA C         AUAG

mdm-miR319b-5p -GAGCUUU-CUUCAGUCCACUC- mtr-miR319b-5p -GAGCUUU-CUUUAGUCCACUCA mdm-miR319e -GAGCUUU-CUUCAGUCCACUC- mdm-miR319c-5p -GAGCUCUUCUUCAGUCCAGUCC mdm-miR319h -GAGCUCUUCUUCAGUCCAGUCC bdi-miR319b-5p AGAGCUCU-CUUCAGUCCACUC- mtr-miR319d-5p AGAGCUCU-CUUCAGUCCACUC- zma-miR319a-5p -GAGCUCU-CUUCAGUCCACUC- zma-miR319c-5p -GAGCUCU-CUUCAGUCCACUC- mdm-miR319g -GAGCUUU-CUUCAGUCCACUC- mdm-miR319f -GAGCUUU-CUUCAGUCCACUC- mtr-miR319a-5p AGAGCUUC-CUUCAGUCCACUC- aly-miR319b-5p AGAGCUUU-CUUCGGUCCACUC- ppt-miR319d-5p.1 -GAGCUUU-CUUCGGUCCAAUA- ***** *** ***** *

TarDB: A miRNA Target Database in Plants.

TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.

miRNA ID

Organism

Mature miRNA Sequence(5'-3')

Precursor miRNA Sequence(5'-3')

Precursor miRNA Structure(5'-3')

Homologous Mature miRNAs miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.