TarDB

Precursor miRNA Sequence(5'-3')

AGGAGCUCUUCUUCAGUCCAGUCCGGGGCRGUUUAAGGGCUGACACUCAGCUGCUGACUCGUUGGUUCAAGAACUCAUCGUACAAAUGCUAAAAGAAGUGGUGUGUUUCUGAUCCAACGAAGCAGGAGCUGAGAGGUUGGUUAUUGCAGUCGCGUCUUGGACUGAAGGGAGCUCCU

miRBase

Precursor miRNA Structure(5'-3')

         U           UC  G   R  UUAAG       -A       G   AC       U   A    U    GUACAAAU   AA 
AGGAGCUCU CUUCAGUCCAG  CG GGC GU     GGCUGAC  CUCAGCU CUG  UCGUUGG UCA GAAC CAUC        GCU  A
||||||||| |||||||||||  || ||| ||     |||||||  ||||||| |||  ||||||| ||| |||| ||||        |||   
UCCUCGAGG GAAGUCAGGUU  GC CUG CG     UUGGUUG  GAGUCGA GAC  AGCAACC AGU UUUG GUGG        UGA  A
         -           CU  G   A  --UUA       GA       G   GA       U   C    U    --------   AG

mdm-miR319b-5p -GAGCUUU-CUUCAGUCCACUC- mtr-miR319b-5p -GAGCUUU-CUUUAGUCCACUCA mdm-miR319e -GAGCUUU-CUUCAGUCCACUC- mdm-miR319c-5p -GAGCUCUUCUUCAGUCCAGUCC mdm-miR319h -GAGCUCUUCUUCAGUCCAGUCC bdi-miR319b-5p AGAGCUCU-CUUCAGUCCACUC- mtr-miR319d-5p AGAGCUCU-CUUCAGUCCACUC- zma-miR319a-5p -GAGCUCU-CUUCAGUCCACUC- zma-miR319c-5p -GAGCUCU-CUUCAGUCCACUC- mdm-miR319g -GAGCUUU-CUUCAGUCCACUC- mdm-miR319f -GAGCUUU-CUUCAGUCCACUC- mtr-miR319a-5p AGAGCUUC-CUUCAGUCCACUC- aly-miR319b-5p AGAGCUUU-CUUCGGUCCACUC- ppt-miR319d-5p.1 -GAGCUUU-CUUCGGUCCAAUA- ***** *** ***** *

TarDB: A miRNA Target Database in Plants.

TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.

miRNA ID

Organism

Mature miRNA Sequence(5'-3')

Precursor miRNA Sequence(5'-3')

Precursor miRNA Structure(5'-3')

Homologous Mature miRNAs miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.