TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

ppe-miR319b

Organism

Prunus persica

Species

Mature miRNA Sequence(5'-3')

UAGCUGCCGAGUCAUUCAUCCA

miRBase

Precursor miRNA Sequence(5'-3')

AGGAUUUAAUUAGCUGCCGAGUCAUUCAUCCAAAUACUGGGUAAAUUAGCUCAGGACACCCAGUAAAUGUGUGAAUGAAGCGGGAGACAAAUUGGAUCUUA

miRBase

Precursor miRNA Structure(5'-3') 

-           A -  G   AG        C  AA        AAAUUA 
 AGGAUUUAAUU G CU CCG  UCAUUCAU CA  UACUGGGU      G
 ||||||||||| | || |||  |||||||| ||  ||||||||      C
 UUCUAGGUUAA C GA GGC  AGUAAGUG GU  AUGACCCA      A
A           A A  G   GA        U  AA        CAGGAC

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

csi-miR159b-5p      -AGCUGCCGACUCAUUCAUUCA
osa-miR319a-5p      -AGCUGCCGAAUCAUCCAUUCA
ppe-miR319b         UAGCUGCCGAGUCAUUCAUCCA
smo-miR319          -UGCUGCCGACUCAUGCAUCC-
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