TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.

miRNA Family

miRNA
Species
Sequence
aly-miR159a-3p
Arabidopsis lyrata
UUUGGAUUGAAGGGAGCUCUA
aly-miR159a-5p
Arabidopsis lyrata
GAGCUCCUUGAAGUUCAAACG
aly-miR159b-3p
Arabidopsis lyrata
UUUGGAUUGAAGGGAGCUCUU
aly-miR159b-5p
Arabidopsis lyrata
GAGCUCCUUGAAGUUCAAUGG
ath-miR159a
Arabidopsis thaliana
UUUGGAUUGAAGGGAGCUCUA
ath-miR159b-3p
Arabidopsis thaliana
UUUGGAUUGAAGGGAGCUCUU
ath-miR159b-5p
Arabidopsis thaliana
GAGCUCCUUGAAGUUCAAUGG
atr-miR159
Amborella trichopoda
UUUGGAUUGAAGGGAGCUCUA
bdi-miR159a-3p
Brachypodium distachyon
CUUGGAUUGAAGGGAGCUCU
bdi-miR159a-5p
Brachypodium distachyon
AGCUCCCUUCGAUCCAAUC
bdi-miR159b-3p.1
Brachypodium distachyon
UUUGGAUUGAAGGGAGCUCUG
bdi-miR159b-3p.3
Brachypodium distachyon
UUUGCAUGACCGAGGAGCCGC
bdi-miR159b-5p.1
Brachypodium distachyon
GAGCUCCUAUCAUUCCAAUGA
bdi-miR159b-5p.3
Brachypodium distachyon
AGCUGCUUGUUCAUGGUUCCC
bdi-miR159c
Brachypodium distachyon
UUUGGUUUGAAGGGGGCUCUG
bol-miR159a
Brassica oleracea
UUUGGAUUGAAGGGAGCUCU
bol-miR159b
Brassica oleracea
UUUGGAUUGAAGGGAGCUCU
bol-miR159c
Brassica oleracea
UUUGGAUUGAAGGGAGCUCU
bra-miR159a
Brassica rapa
UUUGGAUUGAAGGGAGCUCUA
bra-miR159b
Brassica rapa
UUUGGAUUGAAGGGAGCUCUA
bra-miR159c
Brassica rapa
UUUGGAUUGAAGGGAGCUCC
bra-miR159d
Brassica rapa
UUUGGAUUGAAGGGAGCUCUA
cpa-miR159a
Carica papaya
UUUGGAUUGAAGGGAGCUCUA
cru-miR159a
Capsella rubella
UUUGGAUUGAAGGGAGCUCUU
cru-miR159b
Capsella rubella
UUUGGAUUGAAGGGAGCUCUA
csi-miR159a-3p
Citrus sinensis
UUUGGAUUGAAGGGAGCUCUA
csi-miR159a-5p
Citrus sinensis
GAGCUCCUUGAAGUCCAAAAG
esa-miR159a
Eutrema salsugineum
UUUGGAUUGAAGGGAGCUCC
esa-miR159b
Eutrema salsugineum
UUUGGAUUGAAGGGAGCUCUA
fve-miR159a-3p
Fragaria vesca
UUUGGAUUGAAGGGAGCUCUA
fve-miR159a-5p
Fragaria vesca
GAGCUCCUUGAAGUCCAAUAG
fve-miR159b
Fragaria vesca
AUUGGAUUGAAGGGAGCUCUC
gma-miR159a-3p
Glycine max
UUUGGAUUGAAGGGAGCUCUA
gma-miR159a-5p
Glycine max
GAGCUCCUUGAAGUCCAAUUG
gma-miR159d
Glycine max
AGCUGCUUAGCUAUGGAUCCC
gma-miR159e-3p
Glycine max
UUUGGAUUGAAGGGAGCUCUA
gma-miR159e-5p
Glycine max
GAGCUCCUUGAAGUCCAAUU
hvu-miR159a
Hordeum vulgare
UUUGGAUUGAAGGGAGCUCUG
hvu-miR159b
Hordeum vulgare
UUUGGAUUGAAGGGAGCUCUG
lus-miR159a
Linum usitatissimum
AUUGGAGUGAAGGGAGCUCGA
lus-miR159b
Linum usitatissimum
UUUGGAUUGAAGGGAGCUCUC
lus-miR159c
Linum usitatissimum
UUUGGAUUGAAGGGAGCUCUU
mac-miR159a
Musa acuminata
UUUGGAUUGAAGGGAGCUCUA
mac-miR159b
Musa acuminata
UUUGGAUUGAAGGGAGCUCUA
mac-miR159d
Musa acuminata
UUUGGAUUGAAGGGAGCUCUA
mac-miR159e
Musa acuminata
UUUGGAUUGAAGGGAGCUCUA
mdm-miR159d
Malus domestica
UUUGGAUUGAAGGGAGCUCUA
mdm-miR159e
Malus domestica
UUUGGAUUGAAGGGAGCUCUA
mdm-miR159f
Malus domestica
UUUGGAUUGAAGGGAGCUCUA
mes-miR159a-3p
Manihot esculenta
UUUGGAUUGAAGGGAGCUCUA
mes-miR159a-5p
Manihot esculenta
AGCUGCUGAGCUAUGGAUCCC
mes-miR159b
Manihot esculenta
UUUGGAUUGAAGGGAGCUCUA
mes-miR159c
Manihot esculenta
AUUGGAGUGAAGGGAGCUCUG
mes-miR159d
Manihot esculenta
AUUGGAGUGAAGGGAGCUCUG
mtr-miR159a
Medicago truncatula
UUUGGAUUGAAGGGAGCUCUA
osa-miR159a.1
Oryza sativa
UUUGGAUUGAAGGGAGCUCUG
osa-miR159b
Oryza sativa
UUUGGAUUGAAGGGAGCUCUG
osa-miR159c
Oryza sativa
AUUGGAUUGAAGGGAGCUCCA
osa-miR159f
Oryza sativa
CUUGGAUUGAAGGGAGCUCUA
pha-miR159a
Panicum hallii
AGCUGCUCGUUCAUGGUUCC
pha-miR159b
Panicum hallii
AGCUGCUCGUUCAUGGUUCC
pha-miR159c
Panicum hallii
UUUGGAUUGAAGGGAGCUCUG
ppe-miR159
Prunus persica
UUUGGAUUGAAGGGAGCUCUA
ptc-miR159a
Populus trichocarpa
UUUGGAUUGAAGGGAGCUCUA
ptc-miR159b
Populus trichocarpa
UUUGGAUUGAAGGGAGCUCUA
ptc-miR159c
Populus trichocarpa
AUUGGAGUGAAGGGAGCUCGA
pvi-miR159a
Panicum virgatum
UUGCAUGACCGAGGAGCUGC
pvi-miR159b
Panicum virgatum
UUUGGAUUGAAGGGAGCUCUG
pvi-miR159c
Panicum virgatum
UUGCAUGACCGAGGAGCUGC
pvi-miR159d
Panicum virgatum
UUUGGAUUGAAGGGAGCUCUG
pvi-miR159e
Panicum virgatum
UUUGGAUUGAAGGGAGCUCUG
pvi-miR159f
Panicum virgatum
UUUGGAUUGAAGGGAGCUCUG
pvu-miR159a.1
Phaseolus vulgaris
UUUGGAUUGAAGGGAGCUCUA
rco-miR159
Ricinus communis
UUUGGAUUGAAGGGAGCUCUA
sbi-miR159a
Sorghum bicolor
UUUGGAUUGAAGGGAGCUCUG
sly-miR159
Solanum lycopersicum
UUUGGAUUGAAGGGAGCUCUA
sly-miR159b
Solanum lycopersicum
UUGGAAAGAAGGGAGCUCUAC
tae-miR159a
Triticum aestivum
UUUGGAUUGAAGGGAGCUCUG
tae-miR159b
Triticum aestivum
UUUGGAUUGAAGGGAGCUCUG
vvi-miR159a
Vitis vinifera
CUUGGAGUGAAGGGAGCUCUC
vvi-miR159b
Vitis vinifera
CUUGGAGUGAAGGGAGCUCUC
vvi-miR159c
Vitis vinifera
UUUGGAUUGAAGGGAGCUCUA
zma-miR159a-3p
Zea mays
UUUGGAUUGAAGGGAGCUCUG
zma-miR159a-5p
Zea mays
GAGCUCCUAUCAUUCCAAUGA
zma-miR159b-3p
Zea mays
UUUGGAUUGAAGGGAGCUCUG
zma-miR159c-5p
Zea mays
GAGCUCCCUUCGAUCCAAUCC
zma-miR159d-5p
Zea mays
GAGCUCCCUUCGAUCCAAUCC
zma-miR159e-3p
Zea mays
AUUGGUUUGAAGGGAGCUCCA
zma-miR159f-3p
Zea mays
UUUGGAUUGAAGGGAGCUCUG
zma-miR159f-5p
Zea mays
GAGCUCCUCUCAUUCCAAUGA
zma-miR159g-3p
Zea mays
UUUGGAGUGAAGGGAGUUCUG
zma-miR159h-3p
Zea mays
UUUGGAGUGAAGGGAGCUCUG
zma-miR159i-3p
Zea mays
UUUGGAGUGAAGGGAGCUCUG
zma-miR159j-3p
Zea mays
UUUGGAUUGAAGGGAGCUCUG
zma-miR159k-3p
Zea mays
UUUGGAUUGAAGGGAGCUCUG
zos-miR159
Zostera marina
UUUGGAUUGAAGGGAGCUCUA