TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gma-miR159a-5p

Organism

Glycine max

Species

Mature miRNA Sequence(5'-3')

GAGCUCCUUGAAGUCCAAUUG

miRBase

Precursor miRNA Sequence(5'-3')

AAUUAAAGGGGAUUAUGAAGUGGAGCUCCUUGAAGUCCAAUUGAGGAUCUUACUGGGUGAAUUGAGCUGCUUAGCUAUGGAUCCCACAGUUCUACCCAUCAAUAAGUGCUUUUGUGGUAGUCUUGUGGCUUCCAUAUCUGGGGAGCUUCAUUUGCCUUUAUAGUAUUAACCUUCUUUGGAUUGAAGGGAGCUCUACACCCUUCUCUUCUUUUCU

miRBase

Precursor miRNA Structure(5'-3') 

AAUU        UUAUGAA            GA       UU    AUCU    ----        U     G     C      UC      UU     -  UCAAUA 
    AAAGGGGA       GUGGAGCUCCUU  AGUCCAA  GAGG    UACU    GGGUGAAU GAGCU CUUAG UAUGGA  CCACAG  CUACC CA      A
    ||||||||       ||||||||||||  |||||||  ||||    ||||    |||||||| ||||| ||||| ||||||  ||||||  ||||| ||       
    UUUCUUCU       CAUCUCGAGGGA  UUAGGUU  UUCC    AUGA    UCCGUUUA UUCGA GGGUC AUACCU  GGUGUU  GAUGG GU      G
-UCU        CUUCCCA            AG       UC    AAUU    UAUU        C     G     U      UC      CU     U  UUUCGU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ath-miR159b-5p      GAGCUCCUUGAAGUUCAAUGG
aly-miR159b-5p      GAGCUCCUUGAAGUUCAAUGG
gma-miR159a-5p      GAGCUCCUUGAAGUCCAAUUG
gma-miR159e-5p      GAGCUCCUUGAAGUCCAAUU-
fve-miR159a-5p      GAGCUCCUUGAAGUCCAAUAG
aly-miR159a-5p      GAGCUCCUUGAAGUUCAAACG
csi-miR159a-5p      GAGCUCCUUGAAGUCCAAAAG
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