TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

fve-miR159a-5p

Organism

Fragaria vesca

Species

Mature miRNA Sequence(5'-3')

GAGCUCCUUGAAGUCCAAUAG

miRBase

Precursor miRNA Sequence(5'-3')

AGCUAGGGUUAUGGAGUGGAGCUCCUUGAAGUCCAAUAGAAGAUGUUGCUAGGUUGAUUGAGCUGCUGAGCUAUGAAUUCCACACUUCUAUCUCUGUUUUUUGAUAAAGAUGAUAGGCUUGUGGCUUGCAUACCUCAGGAGCUGCAUUACCUGAGUUGCAUCAUGUUUUGGAUUGAAGGGAGCUCUACACCUUGGCU

miRBase

Precursor miRNA Structure(5'-3') 

         UAUGGA            GA       U G A     U   -    U   UG    G     C    AAUU     CU      -   GUUUU 
AGCUAGGGU      GUGGAGCUCCUU  AGUCCAA A A GAUGU GCU AGGU GAU  AGCU CUGAG UAUG    CCACA  UCUAUC UCU     U
|||||||||      ||||||||||||  ||||||| | | ||||| ||| |||| |||  |||| ||||| ||||    |||||  |||||| |||      
UCGGUUCCA      CAUCUCGAGGGA  UUAGGUU U U CUACG UGA UCCA UUA  UCGA GACUC AUAC    GGUGU  GGAUAG AGA     A
         ------            AG       U G A     U   G    -   CG    G     C    GUUC     UC      U   AAUAG

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ath-miR159b-5p      GAGCUCCUUGAAGUUCAAUGG
aly-miR159b-5p      GAGCUCCUUGAAGUUCAAUGG
gma-miR159a-5p      GAGCUCCUUGAAGUCCAAUUG
gma-miR159e-5p      GAGCUCCUUGAAGUCCAAUU-
fve-miR159a-5p      GAGCUCCUUGAAGUCCAAUAG
aly-miR159a-5p      GAGCUCCUUGAAGUUCAAACG
csi-miR159a-5p      GAGCUCCUUGAAGUCCAAAAG
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