TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gma-miR159d

Organism

Glycine max

Species

Mature miRNA Sequence(5'-3')

AGCUGCUUAGCUAUGGAUCCC

miRBase

Precursor miRNA Sequence(5'-3')

GGGUGAAUUGAGCUGCUUAGCUAUGGAUCCCACAGUUCUACCCAUCAAUAAGUGCUUUUGUGGUAGUCUUGUGGCUUCCAUAUCUGGGGAGCUUCAUUUGCCU

miRBase

Precursor miRNA Structure(5'-3') 

        U     G     C      UC      UU     -  UCAAUA 
GGGUGAAU GAGCU CUUAG UAUGGA  CCACAG  CUACC CA      A
|||||||| ||||| ||||| ||||||  ||||||  ||||| ||       
UCCGUUUA UUCGA GGGUC AUACCU  GGUGUU  GAUGG GU      G
        C     G     U      UC      CU     U  UUUCGU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

gma-miR159d         AGCUGCUUAGCUAUGGAUCCC
mes-miR159a-5p      AGCUGCUGAGCUAUGGAUCCC
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