TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

mes-miR159a-5p

Organism

Manihot esculenta

Species

Mature miRNA Sequence(5'-3')

AGCUGCUGAGCUAUGGAUCCC

miRBase

Precursor miRNA Sequence(5'-3')

UGGAGCUCCUUGAAGUCCAAUAGAGGAUCUUGCUGGGUAGAUUGAGCUGCUGAGCUAUGGAUCCCACAGCCCUAUCUCAUAAUAAAGACUUUAGUCUUCUUGGAUAGGCUUGUGGCUUGCAUAUCUCAGGAGCUUCAUUACCUCUUAUGUUAGAUCCUUGUUUGGAUUGAAGGGAGCUCUA

miRBase

Precursor miRNA Structure(5'-3') 

           GA       UA        U  ----U      AUU     G     C    G UC      C      U  UAAUA     U 
UGGAGCUCCUU  AGUCCAA  GAGGAUCU GC     GGGUAG   GAGCU CUGAG UAUG A  CCACAG CCUAUC CA     AAGAC U
|||||||||||  |||||||  |||||||| ||     ||||||   ||||| ||||| |||| |  |||||| |||||| ||     |||||  
AUCUCGAGGGA  UUAGGUU  UUCCUAGA UG     UCCAUU   UUCGA GACUC AUAC U  GGUGUU GGAUAG GU     UUCUG G
           AG       UG        U  UAUUC      -AC     G     U    G UC      C      -  ---UC     A

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

gma-miR159d         AGCUGCUUAGCUAUGGAUCCC
mes-miR159a-5p      AGCUGCUGAGCUAUGGAUCCC
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