TarDB

Precursor miRNA Sequence(5'-3')

AUGAUUAAGAAAGGCGAUCGAAGAGCUCCCUUCGAUCCAAUCCAGGAGGGGAAGUGGUCGGUUGCAGCUGCCGGUUCAUGGAUACCUCUCUGGUGCAGCAAUGGCCGCUGCUCACCUCUGCACUUGCAUGGGUGUGCAUGACCCGGGAGAUGAGCCCGCCAUCAUCUUUCCCUCGUGCUUGGAUUGAAGGGAGCUCCUCUCUGUCUGUCUGUCUGUC

miRBase

Precursor miRNA Structure(5'-3')

AUGAUUA   A    -   C  --A                  UC  G         ----    C    G  G  G    U     G      -CUCU       CAA  -  C 
       AGA AGGC GAU GA   GAGCUCCCUUCGAUCCAA  CA GAGGGGAAG    UGGU GGUU CA CU CCGG UCAUG AUACCU     GGUGCAG   UG GC G
       ||| |||| ||| ||   ||||||||||||||||||  || |||||||||    |||| |||| || || |||| ||||| ||||||     |||||||   || ||  
       UCU UCUG CUG CU   CUCGAGGGAAGUUAGGUU  GU CUCCCUUUC    ACCG CCGA GU GA GGCC AGUAC UGUGGG     UCACGUC   AC CG G
----CUG   G    U   U  CUC                  -C  G         UACU    C    -  A  G    C     G      UACGU       UCC  U  U

TarDB: A miRNA Target Database in Plants.

TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.

miRNA ID

Organism

Mature miRNA Sequence(5'-3')

Precursor miRNA Sequence(5'-3')

Precursor miRNA Structure(5'-3')

Homologous Mature miRNAs miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.