TarDB

Precursor miRNA Sequence(5'-3')

AAGAAGAUGCCGAUCGAUCGAAGAGCUCCCUUCGAUCCAAUCCAGGAGGGAAAGUGGUCGGCUGCAGCUGCCGGUUCAUGGAUACCUCUCUGGUGCAGCAAUGGCCGAGAUGCUCACCUGCACUUGCAUGGGUGUGCAUGACCCGGGAGACGAACCGACCAUCAUCUUUCCCUCGUGCUUGGAUUGAAGGGAGCUCCUCUCUCUCUCUCUCUCUUAU

miRBase

Precursor miRNA Structure(5'-3')

--    -   UGCC  UC  UC  A                  UC  G         ----       CUGCAG  G    U     G      -CUCU       CAAU   CG 
  AAGA AGA    GA  GA  GA GAGCUCCCUUCGAUCCAA  CA GAGGGAAAG    UGGUCGG      CU CCGG UCAUG AUACCU     GGUGCAG    GGC  A
  |||| |||    ||  ||  || ||||||||||||||||||  || |||||||||    |||||||      || |||| ||||| ||||||     |||||||    |||   
  UUCU UCU    CU  CU  CU CUCGAGGGAAGUUAGGUU  GU CUCCCUUUC    ACCAGCC      GA GGCC AGUAC UGUGGG     UCACGUC    UCG  U
UA    C   ----  CU  CU  C                  -C  G         UACU       -AAGCA  G    C     G      UACGU       -CAC   UA

TarDB: A miRNA Target Database in Plants.

TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.

miRNA ID

Organism

Mature miRNA Sequence(5'-3')

Precursor miRNA Sequence(5'-3')

Precursor miRNA Structure(5'-3')

Homologous Mature miRNAs miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.