TarDB

Precursor miRNA Sequence(5'-3')

UCGAUGCUUUGGGUUUGAAGCGGAGCUCCUAUCAUUCCAAUGAAGGGUCGUUCCGAAGGGCUGGUUCCGCUGCUCGUUCAUGGUUCCCACUAUCCUAUCUCAUCAUGUGUAUAUAUGUAAUCCAUGGGGGAGGGUUUCUCUCGUCUUUGAGAUAGGCUUGUGGUUUGCAUGACCGAGGAGCUGCACCGCCCCCUUGCUGGCCGCUCUUUGGAUUGAAGGGAGCUCUGCAUCCUGAUCCACCCCUCC

miRBase

Precursor miRNA Structure(5'-3')

UCGAUGCUU      -U  A           A   U     U  AG     UUC   A   C    U C   G    U     GUUC    UAU         UCAUGUGUAUAUAUGUAAUCC 
         UGGGUU  GA GCGGAGCUCCU UCA UCCAA GA  GGUCG   CGA GGG UGGU C GCU CUCG UCAUG    CCAC   CCUAUCUCA                     A
         ||||||  || ||||||||||| ||| ||||| ||  |||||   ||| ||| |||| | ||| |||| |||||    ||||   |||||||||                     U
         ACCUAG  CU CGUCUCGAGGG AGU AGGUU CU  CCGGU   GUU CCC GCCA G CGA GAGC AGUAC    GGUG   GGAUAGAGU                     G
--CCUCCCC      UC  A           A   U     U  CG     --C   C   C    C U   G    C     GUUU    UUC         UUCUGCUCUCUUUGGGAGGGG

TarDB: A miRNA Target Database in Plants.

TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.

miRNA ID

Organism

Mature miRNA Sequence(5'-3')

Precursor miRNA Sequence(5'-3')

Precursor miRNA Structure(5'-3')

Homologous Mature miRNAs miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.