TarDB

Precursor miRNA Sequence(5'-3')

GGAGCUCCUCUCAUUCCAAUGAAGGGUCCUUCCGAAGGGUGGUUCCGCUGCUCGUUCAUGGUUCCCACUAUCCUAUCUCAUCCAUGUUUGCGUGUCUUCGAGAGGAAGCGGAAGAGAUUCCUGUGGUCGCCUUUUGAGAUAGGCUUGUGGUUUGCAUGACCGAGGAGCUGCACCGACCCCGUGCUGGCCGCUCUUUGGAUUGAAGGGAGCUCUGC

miRBase

Precursor miRNA Structure(5'-3')

--         C   U     U  AG  U  UU -  AA    -   U C   G    U     GUUC    UAU        AUCCAUGUUUGCGUGUCUUCGAGAGGA 
  GGAGCUCCU UCA UCCAA GA  GG CC  C CG  GGGU GGU C GCU CUCG UCAUG    CCAC   CCUAUCUC                           A
  ||||||||| ||| ||||| ||  || ||  | ||  |||| ||| | ||| |||| |||||    ||||   ||||||||                            
  UCUCGAGGG AGU AGGUU CU  CC GG  G GC  CCCA CCA G CGA GAGC AGUAC    GGUG   GGAUAGAG                           G
CG         A   U     U  CG  -  UC U  --    G   C U   G    C     GUUU    UUC        UUUUCCGCUGGUGUCCUUAGAGAAGGC

TarDB: A miRNA Target Database in Plants.

TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.

miRNA ID

Organism

Mature miRNA Sequence(5'-3')

Precursor miRNA Sequence(5'-3')

Precursor miRNA Structure(5'-3')

Homologous Mature miRNAs miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.