TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.

miRNA Family

miRNA
Species
Sequence
aly-miR164a-3p
Arabidopsis lyrata
CACGUACUCCCCUUCUCCAAC
aly-miR164a-5p
Arabidopsis lyrata
UGGAGAAGCAGGGCACGUGCA
aly-miR164b-3p
Arabidopsis lyrata
CAUGUGCCCAUCUUCACCAUC
aly-miR164b-5p
Arabidopsis lyrata
UGGAGAAGCAGGGCACGUGCA
aly-miR164c-3p
Arabidopsis lyrata
CACGUGUUCUACUCCUCCAAC
aly-miR164c-5p
Arabidopsis lyrata
UGGAGAAGCAGGGCACGUGCG
ath-miR164a
Arabidopsis thaliana
UGGAGAAGCAGGGCACGUGCA
ath-miR164b-3p
Arabidopsis thaliana
CAUGUGCCCAUCUUCACCAUC
ath-miR164b-5p
Arabidopsis thaliana
UGGAGAAGCAGGGCACGUGCA
ath-miR164c-3p
Arabidopsis thaliana
CACGUGUUCUACUACUCCAAC
ath-miR164c-5p
Arabidopsis thaliana
UGGAGAAGCAGGGCACGUGCG
atr-miR164a
Amborella trichopoda
UGGAGAAGCAGGGCACGUGCA
atr-miR164b
Amborella trichopoda
UGGAGAAGCAGGGCACGUGCA
bdi-miR164a-3p
Brachypodium distachyon
CAUGUGCCCUUCUUCUCCACC
bdi-miR164a-5p
Brachypodium distachyon
UGGAGAAGCAGGGCACGUGCA
bdi-miR164b
Brachypodium distachyon
UGGAGAAGCAGGGCACGUGCA
bdi-miR164c-3p
Brachypodium distachyon
CAUGUGCGCUCCUUCUCCAGC
bdi-miR164c-5p
Brachypodium distachyon
UGGAGAAGCAGGGCACGUGCU
bdi-miR164e
Brachypodium distachyon
UGGAGAAGCAGGGCACGUGCA
bdi-miR164f
Brachypodium distachyon
UGGAGAAGAAGGGCACAUGCA
bol-miR164a
Brassica oleracea
UGGAGAAGCAGGGCACGUGC
bol-miR164b
Brassica oleracea
UGGAGAAGCAGGGCACGUGC
bol-miR164c
Brassica oleracea
UGGAGAAGCAGGGCACGUGC
bra-miR164a
Brassica rapa
UGGAGAAGCAGGGCACGUGCA
bra-miR164b
Brassica rapa
UGGAGAAGCAGGGCACGUGCG
bra-miR164c
Brassica rapa
UGGAGAAGCAGGGCACGUGCG
bra-miR164d
Brassica rapa
UGGAGAAGCAGGGCACGUGCG
bra-miR164e
Brassica rapa
UGGAGAAGCAGGGCACGUGCA
bra-miR164f
Brassica rapa
UGGAGAAGCAGGGCACGUGCA
cpa-miR164a
Carica papaya
UGGAGAAGCAGGGCACGUGCA
cpa-miR164b
Carica papaya
UGGAGAAGCAGGGCACGUGCA
cpa-miR164c
Carica papaya
UGGAGAAGCAGGGCACGUGCA
cpa-miR164d
Carica papaya
UGGAGAAGGGGAGCACGUGCA
cpa-miR164e
Carica papaya
UGGAGAAGGGGAGCACGUGCA
cru-miR164a
Capsella rubella
UGGAGAAGCAGGGCACGUGCA
cru-miR164b
Capsella rubella
UGGAGAAGCAGGGCACGUGCG
cru-miR164c
Capsella rubella
UGGAGAAGCAGGGCACGUGCA
csi-miR164a-3p
Citrus sinensis
CAUGUGCCCUUCUUCCCCAUC
csi-miR164a-5p
Citrus sinensis
UGGAGAAGCAGGGCACGUGCA
csi-miR164b-3p
Citrus sinensis
CACGCGCUCCCCUUCUCCAAC
csi-miR164b-5p
Citrus sinensis
UGGAGAAGCAGGGCACGUGCA
csi-miR164c-3p
Citrus sinensis
CACGCGCUCCCCUUCUCCAAC
csi-miR164c-5p
Citrus sinensis
UGGAGAAGCAGGGCACGUGCA
csi-miR164d-3p
Citrus sinensis
CACGCGCUCCCCUUCUCCAAC
csi-miR164d-5p
Citrus sinensis
UGGAGAAGCAGGGCACGUGCA
dca-miR164-b2.0r1-13907
Daucus carota
CGUGUGCUCUUGCUCUCCAGC
dca-miR164-b2.0r1-17943
Daucus carota
CAUGUGCUCUUGCUCUCCUGC
dca-miR164-b2.0r1-22778
Daucus carota
UGGAGAAGCAGGGCACGUGCA
dca-miR164-b2.0r1-2369
Daucus carota
UGGAGAAGCAGGGCACGUGCA
esa-miR164a
Eutrema salsugineum
UGGAGAAGCAGGGCACGUGCG
esa-miR164b
Eutrema salsugineum
UGGAGAAGCAGGGCACGUGCA
esa-miR164c
Eutrema salsugineum
UGGAGAAGCAGGGCACGUGCA
fve-miR164a-3p
Fragaria vesca
CACGUGCUCCCCUUCUCCAAC
fve-miR164a-5p
Fragaria vesca
UGGAGAAGCAGGGCACGUGCA
fve-miR164b
Fragaria vesca
UGGAGAAGCAGGGCACGUGCA
fve-miR164c
Fragaria vesca
UGGAGAAGCAGGGCACAUGCU
gma-miR164a
Glycine max
UGGAGAAGCAGGGCACGUGCA
gma-miR164b
Glycine max
UGGAGAAGCAGGGCACGUGC
gma-miR164c
Glycine max
UGGAGAAGCAGGGCACGUGC
gma-miR164d
Glycine max
UGGAGAAGCAGGGCACGUGC
gma-miR164e
Glycine max
UGGAGAAGCAGGGCACGUGCA
gma-miR164f
Glycine max
UGGAGAAGCAGGGCACGUGCA
gma-miR164g
Glycine max
UGGAGAAGCAGGGCACGUGCA
gma-miR164h
Glycine max
UGGAGAAGCAGGGCACGUGCA
gma-miR164i
Glycine max
UGGAGAAGCAGGGCACGUGCA
gma-miR164j
Glycine max
UGGAGAAGCAGGGCACGUGCA
gma-miR164k
Glycine max
UGGAGAAGCAGGGCACGUGCA
lus-miR164a
Linum usitatissimum
UGGAGAAGCAGGGCACGUGCA
lus-miR164b
Linum usitatissimum
UGGAGAAGCAGGGCACGUGCA
lus-miR164c
Linum usitatissimum
UGGAGAAGCAGGGCACGUGCA
lus-miR164d
Linum usitatissimum
UGGAGAAGCAGGGCACGUGCA
lus-miR164e
Linum usitatissimum
UGGAGAAGCAGGGCACGUGCA
mac-miR164a
Musa acuminata
UGGAGAAGCAGGGUACGUGCA
mac-miR164b
Musa acuminata
UGGAGAAGCAGGUCACGUGCA
mac-miR164c
Musa acuminata
UGGAGAAGCAGGUCACGUGCA
mac-miR164d
Musa acuminata
UGGAGAAGCAGGGCACGUGCA
mac-miR164e
Musa acuminata
UGGAGAAGCAGGGCACGUGCA
mac-miR164f
Musa acuminata
UGGAGAAGCAGGGCACGUGCA
mac-miR164g
Musa acuminata
UGGAGAAGCAGGGUACGUGCA
mac-miR164h
Musa acuminata
UGGAGAAGCAGGGCACGUGCA
mac-miR164i
Musa acuminata
UGGAGAAGCAGGGCACGUGCA
mac-miR164j
Musa acuminata
UGGAGAAGCAGGGCACGUGUU
mac-miR164k
Musa acuminata
UGGAGAAGCAGGGCACGUGCA
mac-miR164l
Musa acuminata
UGGAGAAGCAGGGCACGUGCA
mdm-miR164a
Malus domestica
UGGAGAAGCAGGGCACAUGCC
mdm-miR164b
Malus domestica
UGGAGAAGCAGGGCACGUGCA
mdm-miR164c
Malus domestica
UGGAGAAGCAGGGCACGUGCA
mdm-miR164d
Malus domestica
UGGAGAAGCAGGGCACGUGCA
mdm-miR164e
Malus domestica
UGGAGAAGCAGGGCACGUGCA
mdm-miR164f
Malus domestica
UGGAGAAGCAGGGCACGUGCA
mes-miR164a
Manihot esculenta
UGGAGAAGCAGGGCACGUGCA
mes-miR164b
Manihot esculenta
UGGAGAAGCAGGGCACGUGCA
mes-miR164c
Manihot esculenta
UGGAGAAGCAGGGCACGUGCA
mes-miR164d
Manihot esculenta
UGGAGAAGCAGGGCACAUGCU
mtr-miR164a
Medicago truncatula
UGGAGAAGCAGGGCACGUGCA
mtr-miR164b
Medicago truncatula
UGGAGAAGCAGGGCACGUGCA
mtr-miR164c
Medicago truncatula
UGGAGAAGCAGGGCACGUGCA
mtr-miR164d
Medicago truncatula
UGGAGAAGCAGGGCACAUGCU
osa-miR164a
Oryza sativa
UGGAGAAGCAGGGCACGUGCA
osa-miR164b
Oryza sativa
UGGAGAAGCAGGGCACGUGCA
osa-miR164c
Oryza sativa
UGGAGAAGCAGGGUACGUGCA
osa-miR164d
Oryza sativa
UGGAGAAGCAGGGCACGUGCU
osa-miR164e
Oryza sativa
UGGAGAAGCAGGGCACGUGAG
osa-miR164f
Oryza sativa
UGGAGAAGCAGGGCACGUGCA
pha-miR164a
Panicum hallii
UGGAGAAGCAGGGCACGUGCA
pha-miR164b
Panicum hallii
UGGAGAAGCAGGGCACGUGCA
pha-miR164c
Panicum hallii
UGGAGAAGCAGGGCACGUGCA
pha-miR164d
Panicum hallii
UGGAGAAGCAGGGUACGUGCA
ppe-miR164a
Prunus persica
UGGAGAAGCAGGGCACGUGCA
ppe-miR164b
Prunus persica
UGGAGAAGCAGGGCACGUGCA
ppe-miR164c
Prunus persica
UGGAGAAGCAGGGCACGUGCA
ppe-miR164d
Prunus persica
UGGAGAAGCAGGGCACAUGCU
ptc-miR164a
Populus trichocarpa
UGGAGAAGCAGGGCACGUGCA
ptc-miR164b
Populus trichocarpa
UGGAGAAGCAGGGCACGUGCA
ptc-miR164c
Populus trichocarpa
UGGAGAAGCAGGGCACGUGCA
ptc-miR164d
Populus trichocarpa
UGGAGAAGCAGGGCACGUGCA
ptc-miR164e
Populus trichocarpa
UGGAGAAGCAGGGCACGUGCA
ptc-miR164f
Populus trichocarpa
UGGAGAAGCAGGGCACAUGCU
pvi-miR164a
Panicum virgatum
UGGAGAAGCAGGGCACGUGCA
pvi-miR164b
Panicum virgatum
UGGAGAAGCAGGGCACGUGCA
pvi-miR164c
Panicum virgatum
UGGAGAAGCAGGGCACGUGCA
pvi-miR164d
Panicum virgatum
UGGAGAAGCAGGGCACGUGCA
pvi-miR164e
Panicum virgatum
UGGAGAAGCAGGGCACGUGCA
pvi-miR164f
Panicum virgatum
UGGAGAAGCAGGGUACGUGCA
pvi-miR164g
Panicum virgatum
UGGAGAAGCAGGGUACGUGCA
pvi-miR164h
Panicum virgatum
UGGAGAAGCAGGGUACGUGCA
rco-miR164a
Ricinus communis
UGGAGAAGCAGGGCACGUGCA
rco-miR164b
Ricinus communis
UGGAGAAGCAGGGCACGUGCA
rco-miR164c
Ricinus communis
UGGAGAAGCAGGGCACGUGCA
rco-miR164d
Ricinus communis
UGGAGAAGCAGGGCACAUGCU
sbi-miR164a
Sorghum bicolor
UGGAGAAGCAGGGCACGUGCA
sbi-miR164b
Sorghum bicolor
UGGAGAAGCAGGGCACGUGCU
sbi-miR164c
Sorghum bicolor
UGGAGAAGCAGGACACGUGAG
sbi-miR164d
Sorghum bicolor
UGGAGAAGCAGGGCACGUGCA
sbi-miR164e
Sorghum bicolor
UGGAGAAGCAGGGCACGUGCA
sit-miR164a
Setaria italica
UGGAGAAGCAGGGCACGUGCA
sit-miR164b
Setaria italica
UGGAGAAGCAGGGCACGUGCA
sit-miR164c
Setaria italica
UGGAGAAGCAGGGCACGUGCA
sit-miR164d
Setaria italica
UGGAGAAGCAGGGCACGUGCA
sit-miR164e
Setaria italica
UGGAGAAGCAGGGCACGUGCU
sit-miR164f
Setaria italica
UGGAGAAGCAGGACACGUGAG
sly-miR164a-5p
Solanum lycopersicum
UGGAGAAGCAGGGCACGUGCA
sly-miR164b-3p
Solanum lycopersicum
CACGUGUUCUCCUUCUCCAAC
sly-miR164b-5p
Solanum lycopersicum
UGGAGAAGCAGGGCACGUGCA
spo-miR164
Spirodela polyrhiza
UGGAGAAGCAGGGCACGUGCA
stu-miR164-3p
Solanum tuberosum
CAUGUGCUCUAGCUCUCCAGC
stu-miR164-5p
Solanum tuberosum
UGGAGAAGCAGGGCACAUGCU
tae-miR164
Triticum aestivum
UGGAGAAGCAGGGCACGUGCA
tcc-miR164a
Theobroma cacao
UGGAGAAGCAGGGCACGUGCA
tcc-miR164b
Theobroma cacao
UGGAGAAGCAGGGCACGUGCA
tcc-miR164c
Theobroma cacao
UGGAGAAGCAGGGCACAUGCU
vvi-miR164a
Vitis vinifera
UGGAGAAGCAGGGCACGUGCA
vvi-miR164b
Vitis vinifera
UGGAGAAGCAGGGCACAUGCU
vvi-miR164c
Vitis vinifera
UGGAGAAGCAGGGCACGUGCA
vvi-miR164d
Vitis vinifera
UGGAGAAGCAGGGCACGUGCA
zma-miR164a-3p
Zea mays
CACGUGUUCUCCUUCUCCAUC
zma-miR164a-5p
Zea mays
UGGAGAAGCAGGGCACGUGCA
zma-miR164b-3p
Zea mays
AUGUGCCCAUCUUCUCCACC
zma-miR164b-5p
Zea mays
UGGAGAAGCAGGGCACGUGCA
zma-miR164c-3p
Zea mays
CAUGUGCCCUUCUUCUCCAUC
zma-miR164c-5p
Zea mays
UGGAGAAGCAGGGCACGUGCA
zma-miR164d-3p
Zea mays
CACGUGGUCUCCUUCUCCAU
zma-miR164d-5p
Zea mays
UGGAGAAGCAGGGCACGUGCA
zma-miR164e-5p
Zea mays
UGGAGAAGCAGGACACGUGAG
zma-miR164f-3p
Zea mays
CACGUGCGCUCCUUCUCCAAC
zma-miR164f-5p
Zea mays
UGGAGAAGCAGGGCACGUGCU
zma-miR164g-3p
Zea mays
CACGUGCUCCCCUUCUCCACC
zma-miR164g-5p
Zea mays
UGGAGAAGCAGGGCACGUGCA
zma-miR164h-3p
Zea mays
CAUGUGCCCUUCUUCUCCAUC
zma-miR164h-5p
Zea mays
UGGAGAAGCAGGGCACGUGUG
zos-miR164a
Zostera marina
UGGAGAAGCAGGGCACAUGCA
zos-miR164b
Zostera marina
UGGAGAAGCAGGGUACGUGCA
zos-miR164c
Zostera marina
UGGAGAAGCAGGGCACGUGCA
zos-miR164d
Zostera marina
UGGAGAAGCAGGGUACGUGCA