TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

ath-miR164c-3p

Organism

Arabidopsis thaliana

Species

Mature miRNA Sequence(5'-3')

CACGUGUUCUACUACUCCAAC

miRBase

Precursor miRNA Sequence(5'-3')

UAACACUUGAUGGAGAAGCAGGGCACGUGCGAACACAAAUGAAAUCGAUCGGUACUUGUUGAUCAUAUUUUCGCACGUGUUCUACUACUCCAACACGUGUCU

miRBase

Precursor miRNA Structure(5'-3') 

UA    U  A     A  C              CACAA    AA     CGG 
  ACAC UG UGGAG AG AGGGCACGUGCGAA     AUGA  UCGAU   U
  |||| || ||||| || ||||||||||||||     ||||  |||||    
  UGUG AC ACCUC UC UCUUGUGCACGCUU     UACU  AGUUG   U
UC    C  A     A  A              --UUA    --     UUC

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

sly-miR164b-3p      CACGUGUUCUCCUUCUCCAAC
zma-miR164a-3p      CACGUGUUCUCCUUCUCCAUC
ath-miR164c-3p      CACGUGUUCUACUACUCCAAC
aly-miR164c-3p      CACGUGUUCUACUCCUCCAAC
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