TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

aly-miR164c-3p

Organism

Arabidopsis lyrata

Species

Mature miRNA Sequence(5'-3')

CACGUGUUCUACUCCUCCAAC

miRBase

Precursor miRNA Sequence(5'-3')

GGGUGAGUAACACUUGAUGGAGAAGCAGGGCACGUGCGAACACAAAUGAGAUCGAUCGGUACAUGAUGAUCAUAUUUUCGCACGUGUUCUACUCCUCCAACACGUGUCUCUCCCC

miRBase

Precursor miRNA Structure(5'-3') 

   U   UA    U  A     A  C              CACA    A    G    G 
GGG GAG  ACAC UG UGGAG AG AGGGCACGUGCGAA    AAUG GAUC AUCG U
||| |||  |||| || ||||| || ||||||||||||||    |||| |||| |||| A
CCC CUC  UGUG AC ACCUC UC UCUUGUGCACGCUU    UUAU CUAG UAGU U
   -   UC    C  A     C  A              ----    A    -    A

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

sly-miR164b-3p      CACGUGUUCUCCUUCUCCAAC
zma-miR164a-3p      CACGUGUUCUCCUUCUCCAUC
ath-miR164c-3p      CACGUGUUCUACUACUCCAAC
aly-miR164c-3p      CACGUGUUCUACUCCUCCAAC
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