TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

stu-miR164-3p

Organism

Solanum tuberosum

Species

Mature miRNA Sequence(5'-3')

CAUGUGCUCUAGCUCUCCAGC

miRBase

Precursor miRNA Sequence(5'-3')

UGGAGAAGCAGGGCACAUGCUGAAUUACUUGAAACUUUGAUUAUUCAAGAAUUUUGCAUGUGCUCUAGCUCUCCAGC

miRBase

Precursor miRNA Structure(5'-3') 

--      A  -           U     A      ACUU 
  UGGAGA GC AGGGCACAUGC GAAUU CUUGAA    U
  |||||| || ||||||||||| ||||| ||||||     
  ACCUCU CG UCUCGUGUACG UUUAA GAACUU    U
CG      -  A           U     -      AUUA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

dca-miR164-b2.0r1-13907      CGUGUGCUCUUGCUCUCCAGC
stu-miR164-3p                CAUGUGCUCUAGCUCUCCAGC
dca-miR164-b2.0r1-17943      CAUGUGCUCUUGCUCUCCUGC
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