TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

csi-miR164c-3p

Organism

Citrus sinensis

Species

Mature miRNA Sequence(5'-3')

CACGCGCUCCCCUUCUCCAAC

miRBase

Precursor miRNA Sequence(5'-3')

AUACUCAUGGCAUGGGUGGGUAGCUCUUGUUGGAGAAGCAGGGCACGUGCAAUUCACAUGCGUAGAUCAUAUGAUAUCUUACAAGACUUUGCACGCGCUCCCCUUCUCCAACACGUGUUUCUCGCCCUCAAUUCUCUCAUUC

miRBase

Precursor miRNA Structure(5'-3') 

--AUACUCAUGGCAU       U   U U           CA    A       UUCACAUGCGUAG   A 
               GGGUGGG AGC C UGUUGGAGAAG  GGGC CGUGCAA             AUC U
               ||||||| ||| | |||||||||||  |||| |||||||             |||  
               CCCGCUC UUG G ACAACCUCUUC  CUCG GCACGUU             UAG G
CUUACUCUCUUAACU       U   U C           CC    C       UCAGAACAUUCUA   U

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

csi-miR164c-3p      CACGCGCUCCCCUUCUCCAAC
csi-miR164d-3p      CACGCGCUCCCCUUCUCCAAC
csi-miR164b-3p      CACGCGCUCCCCUUCUCCAAC
aly-miR164a-3p      CACGUACUCCCCUUCUCCAAC
fve-miR164a-3p      CACGUGCUCCCCUUCUCCAAC
zma-miR164g-3p      CACGUGCUCCCCUUCUCCACC
zma-miR164f-3p      CACGUGCGCUCCUUCUCCAAC
bdi-miR164c-3p      CAUGUGCGCUCCUUCUCCAGC
zma-miR164d-3p      CACGUGGUCUCCUUCUCCAU-
                    ** *    * *********