TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

zma-miR164h-3p

Organism

Zea mays

Species

Mature miRNA Sequence(5'-3')

CAUGUGCCCUUCUUCUCCAUC

miRBase

Precursor miRNA Sequence(5'-3')

GUGGAGAAGCAGGGCACGUGUGAAUUCAUUCGUUCCAUCGACGGUCUGGCGCCGACUCACGCAUCGCCGGCGCGGCGAGCUGAGCGCGUGACACGGAAAGCAGGUCCGCCGCGCCGGCGCCCGCGCUGGCCGAUCGACCGGCUAACUGUAGCUCCACGAAGCAAAGCCAGGCCAGCCGGCCGAUCGAUGCGUGCGUGCAUGUGCCCUUCUUCUCCAUCG

miRBase

Precursor miRNA Structure(5'-3') 

------------------------GUGGAGAAGCAGGGCACGUGUGAAUUCAUUCGUUCCAUCGACGGUCUGGCGCCGACUCACGCAUC          C A    A     U ACA    AA 
                                                                                         GCCGGCGCGG G GCUG GCGCG G   CGGA  G
                                                                                         |||||||||| | |||| ||||| |   ||||  C
                                                                                         CGGUCGCGCC C CGGC CGCGC C   GCCU  G
GCUACCUCUUCUUCCCGUGUACGUGCGUGCGUAGCUAGCCGGCCGACCGGACCGAAACGAAGCACCUCGAUGUCAAUCGGCCAGCUAGC          - G    -     - ---    GG

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ath-miR164b-3p      CAUGUGCCCAUCUUCACCAUC
aly-miR164b-3p      CAUGUGCCCAUCUUCACCAUC
zma-miR164c-3p      CAUGUGCCCUUCUUCUCCAUC
zma-miR164h-3p      CAUGUGCCCUUCUUCUCCAUC
csi-miR164a-3p      CAUGUGCCCUUCUUCCCCAUC
zma-miR164b-3p      -AUGUGCCCAUCUUCUCCACC
bdi-miR164a-3p      CAUGUGCCCUUCUUCUCCACC
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