TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



bra-miR164b
Brassica rapa

Species
AATGGGTGAGTTACACTTGCTGGAGAAGCAGGGCACGTGCGAACAAATGAGATCGATCAGTATATATGTTGATCATATTTTCGCACGTGTTCTACTACTCCAACACGTGTGCCTCCCCCTCTCC

PmiREN
--AAU   U   U     U  C     A  C              CA    A      U  GU 
     GGG GAG UACAC UG UGGAG AG AGGGCACGUGCGAA  AAUG GAUCGA CA  A
     ||| ||| ||||| || ||||| || ||||||||||||||  |||| |||||| ||  U
     CCC CUC GUGUG AC ACCUC UC UCUUGUGCACGCUU  UUAU CUAGUU GU  A
CCUCU   C   C     C  A     A  A              --    A      -  AU 

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

bra-miR164b                  UGGAGAAGCAGGGCACGUGCG
bra-miR164c                  UGGAGAAGCAGGGCACGUGCG
bra-miR164d                  UGGAGAAGCAGGGCACGUGCG
cru-miR164b                  UGGAGAAGCAGGGCACGUGCG
esa-miR164a                  UGGAGAAGCAGGGCACGUGCG
ath-miR164c-5p               UGGAGAAGCAGGGCACGUGCG
aly-miR164c-5p               UGGAGAAGCAGGGCACGUGCG
mac-miR164j                  UGGAGAAGCAGGGCACGUGUU
zma-miR164h-5p               UGGAGAAGCAGGGCACGUGUG
sit-miR164f                  UGGAGAAGCAGGACACGUGAG
sbi-miR164c                  UGGAGAAGCAGGACACGUGAG
zma-miR164e-5p               UGGAGAAGCAGGACACGUGAG
osa-miR164e                  UGGAGAAGCAGGGCACGUGAG
sit-miR164e                  UGGAGAAGCAGGGCACGUGCU
osa-miR164d                  UGGAGAAGCAGGGCACGUGCU
sbi-miR164b                  UGGAGAAGCAGGGCACGUGCU
zma-miR164f-5p               UGGAGAAGCAGGGCACGUGCU
bdi-miR164c-5p               UGGAGAAGCAGGGCACGUGCU
bol-miR164a                  UGGAGAAGCAGGGCACGUGC-
zos-miR164a                  UGGAGAAGCAGGGCACAUGCA
bdi-miR164f                  UGGAGAAGAAGGGCACAUGCA
ptc-miR164f                  UGGAGAAGCAGGGCACAUGCU
mtr-miR164d                  UGGAGAAGCAGGGCACAUGCU
vvi-miR164b                  UGGAGAAGCAGGGCACAUGCU
rco-miR164d                  UGGAGAAGCAGGGCACAUGCU
tcc-miR164c                  UGGAGAAGCAGGGCACAUGCU
mes-miR164d                  UGGAGAAGCAGGGCACAUGCU
stu-miR164-5p                UGGAGAAGCAGGGCACAUGCU
ppe-miR164d                  UGGAGAAGCAGGGCACAUGCU
fve-miR164c                  UGGAGAAGCAGGGCACAUGCU
mdm-miR164a                  UGGAGAAGCAGGGCACAUGCC
bol-miR164b                  UGGAGAAGCAGGGCACGUGC-
bol-miR164c                  UGGAGAAGCAGGGCACGUGC-
gma-miR164b                  UGGAGAAGCAGGGCACGUGC-
gma-miR164c                  UGGAGAAGCAGGGCACGUGC-
gma-miR164d                  UGGAGAAGCAGGGCACGUGC-
dca-miR164-b2.0r1-2369       UGGAGAAGCAGGGCACGUGCA
dca-miR164-b2.0r1-22778      UGGAGAAGCAGGGCACGUGCA
bra-miR164a                  UGGAGAAGCAGGGCACGUGCA
bra-miR164e                  UGGAGAAGCAGGGCACGUGCA
bra-miR164f                  UGGAGAAGCAGGGCACGUGCA
cru-miR164a                  UGGAGAAGCAGGGCACGUGCA
cru-miR164c                  UGGAGAAGCAGGGCACGUGCA
esa-miR164b                  UGGAGAAGCAGGGCACGUGCA
esa-miR164c                  UGGAGAAGCAGGGCACGUGCA
mac-miR164d                  UGGAGAAGCAGGGCACGUGCA
mac-miR164e                  UGGAGAAGCAGGGCACGUGCA
mac-miR164f                  UGGAGAAGCAGGGCACGUGCA
mac-miR164h                  UGGAGAAGCAGGGCACGUGCA
mac-miR164i                  UGGAGAAGCAGGGCACGUGCA
mac-miR164k                  UGGAGAAGCAGGGCACGUGCA
pha-miR164a                  UGGAGAAGCAGGGCACGUGCA
pvi-miR164b                  UGGAGAAGCAGGGCACGUGCA
sit-miR164a                  UGGAGAAGCAGGGCACGUGCA
spo-miR164                   UGGAGAAGCAGGGCACGUGCA
ath-miR164b-5p               UGGAGAAGCAGGGCACGUGCA
zma-miR164a-5p               UGGAGAAGCAGGGCACGUGCA
sbi-miR164a                  UGGAGAAGCAGGGCACGUGCA
ptc-miR164d                  UGGAGAAGCAGGGCACGUGCA
mtr-miR164c                  UGGAGAAGCAGGGCACGUGCA
gma-miR164a                  UGGAGAAGCAGGGCACGUGCA
csi-miR164a-5p               UGGAGAAGCAGGGCACGUGCA
aly-miR164a-5p               UGGAGAAGCAGGGCACGUGCA
bdi-miR164b                  UGGAGAAGCAGGGCACGUGCA
lus-miR164b                  UGGAGAAGCAGGGCACGUGCA
gma-miR164e                  UGGAGAAGCAGGGCACGUGCA
gma-miR164i                  UGGAGAAGCAGGGCACGUGCA
mdm-miR164c                  UGGAGAAGCAGGGCACGUGCA
mes-miR164a                  UGGAGAAGCAGGGCACGUGCA
ppe-miR164a                  UGGAGAAGCAGGGCACGUGCA
cpa-miR164c                  UGGAGAAGCAGGGCACGUGCA
sly-miR164a-5p               UGGAGAAGCAGGGCACGUGCA
csi-miR164b-5p               UGGAGAAGCAGGGCACGUGCA
mac-miR164b                  UGGAGAAGCAGGUCACGUGCA
mac-miR164c                  UGGAGAAGCAGGUCACGUGCA
pha-miR164c                  UGGAGAAGCAGGGCACGUGCA
pvi-miR164d                  UGGAGAAGCAGGGCACGUGCA
sit-miR164c                  UGGAGAAGCAGGGCACGUGCA
tae-miR164                   UGGAGAAGCAGGGCACGUGCA
osa-miR164b                  UGGAGAAGCAGGGCACGUGCA
zma-miR164b-5p               UGGAGAAGCAGGGCACGUGCA
ptc-miR164b                  UGGAGAAGCAGGGCACGUGCA
mtr-miR164a                  UGGAGAAGCAGGGCACGUGCA
vvi-miR164c                  UGGAGAAGCAGGGCACGUGCA
sbi-miR164e                  UGGAGAAGCAGGGCACGUGCA
rco-miR164b                  UGGAGAAGCAGGGCACGUGCA
tcc-miR164a                  UGGAGAAGCAGGGCACGUGCA
bdi-miR164e                  UGGAGAAGCAGGGCACGUGCA
lus-miR164d                  UGGAGAAGCAGGGCACGUGCA
gma-miR164g                  UGGAGAAGCAGGGCACGUGCA
gma-miR164k                  UGGAGAAGCAGGGCACGUGCA
mdm-miR164e                  UGGAGAAGCAGGGCACGUGCA
mes-miR164c                  UGGAGAAGCAGGGCACGUGCA
cpa-miR164a                  UGGAGAAGCAGGGCACGUGCA
atr-miR164b                  UGGAGAAGCAGGGCACGUGCA
fve-miR164b                  UGGAGAAGCAGGGCACGUGCA
csi-miR164d-5p               UGGAGAAGCAGGGCACGUGCA
mac-miR164a                  UGGAGAAGCAGGGUACGUGCA
mac-miR164g                  UGGAGAAGCAGGGUACGUGCA
pha-miR164d                  UGGAGAAGCAGGGUACGUGCA
pvi-miR164f                  UGGAGAAGCAGGGUACGUGCA
pvi-miR164g                  UGGAGAAGCAGGGUACGUGCA
pvi-miR164h                  UGGAGAAGCAGGGUACGUGCA
zos-miR164b                  UGGAGAAGCAGGGUACGUGCA
zos-miR164d                  UGGAGAAGCAGGGUACGUGCA
osa-miR164c                  UGGAGAAGCAGGGUACGUGCA
pha-miR164b                  UGGAGAAGCAGGGCACGUGCA
pvi-miR164c                  UGGAGAAGCAGGGCACGUGCA
sit-miR164b                  UGGAGAAGCAGGGCACGUGCA
zos-miR164c                  UGGAGAAGCAGGGCACGUGCA
osa-miR164a                  UGGAGAAGCAGGGCACGUGCA
zma-miR164d-5p               UGGAGAAGCAGGGCACGUGCA
ptc-miR164a                  UGGAGAAGCAGGGCACGUGCA
ptc-miR164e                  UGGAGAAGCAGGGCACGUGCA
vvi-miR164a                  UGGAGAAGCAGGGCACGUGCA
sbi-miR164d                  UGGAGAAGCAGGGCACGUGCA
rco-miR164a                  UGGAGAAGCAGGGCACGUGCA
aly-miR164b-5p               UGGAGAAGCAGGGCACGUGCA
bdi-miR164a-5p               UGGAGAAGCAGGGCACGUGCA
lus-miR164c                  UGGAGAAGCAGGGCACGUGCA
gma-miR164f                  UGGAGAAGCAGGGCACGUGCA
gma-miR164j                  UGGAGAAGCAGGGCACGUGCA
mdm-miR164d                  UGGAGAAGCAGGGCACGUGCA
mes-miR164b                  UGGAGAAGCAGGGCACGUGCA
ppe-miR164c                  UGGAGAAGCAGGGCACGUGCA
atr-miR164a                  UGGAGAAGCAGGGCACGUGCA
fve-miR164a-5p               UGGAGAAGCAGGGCACGUGCA
csi-miR164c-5p               UGGAGAAGCAGGGCACGUGCA
sly-miR164b-5p               UGGAGAAGCAGGGCACGUGCA
cpa-miR164b                  UGGAGAAGCAGGGCACGUGCA
ppe-miR164b                  UGGAGAAGCAGGGCACGUGCA
mdm-miR164f                  UGGAGAAGCAGGGCACGUGCA
mdm-miR164b                  UGGAGAAGCAGGGCACGUGCA
gma-miR164h                  UGGAGAAGCAGGGCACGUGCA
lus-miR164e                  UGGAGAAGCAGGGCACGUGCA
lus-miR164a                  UGGAGAAGCAGGGCACGUGCA
tcc-miR164b                  UGGAGAAGCAGGGCACGUGCA
rco-miR164c                  UGGAGAAGCAGGGCACGUGCA
zma-miR164g-5p               UGGAGAAGCAGGGCACGUGCA
vvi-miR164d                  UGGAGAAGCAGGGCACGUGCA
mtr-miR164b                  UGGAGAAGCAGGGCACGUGCA
ptc-miR164c                  UGGAGAAGCAGGGCACGUGCA
zma-miR164c-5p               UGGAGAAGCAGGGCACGUGCA
osa-miR164f                  UGGAGAAGCAGGGCACGUGCA
ath-miR164a                  UGGAGAAGCAGGGCACGUGCA
sit-miR164d                  UGGAGAAGCAGGGCACGUGCA
pvi-miR164e                  UGGAGAAGCAGGGCACGUGCA
pvi-miR164a                  UGGAGAAGCAGGGCACGUGCA
mac-miR164l                  UGGAGAAGCAGGGCACGUGCA
cpa-miR164d                  UGGAGAAGGGGAGCACGUGCA
cpa-miR164e                  UGGAGAAGGGGAGCACGUGCA
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