TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.

miRNA Family

miRNA
Species
Sequence
aly-miR399a-3p
Arabidopsis lyrata
UGCCAAAGGAGAUUUGCCCGG
aly-miR399a-5p
Arabidopsis lyrata
GGGUAAGAUCUCUAUUGGCAGG
aly-miR399b-3p
Arabidopsis lyrata
UGCCAAAGGAGAGUUGCCCUG
aly-miR399b-5p
Arabidopsis lyrata
GGGCGCCUCUCCAUUGGCAGG
aly-miR399c-3p
Arabidopsis lyrata
UGCCAAAGGAGAGUUGCCCUG
aly-miR399c-5p
Arabidopsis lyrata
GGGCAUCUUUCUAUUGGCAGG
aly-miR399d-3p
Arabidopsis lyrata
UGCCAAAGGAGAUUUGCCCCG
aly-miR399d-5p
Arabidopsis lyrata
GGGCGAAUACUCCUAUGGCAGA
aly-miR399e-3p
Arabidopsis lyrata
UGCCAAAGGAGAUUUGCCUCG
aly-miR399e-5p
Arabidopsis lyrata
GGGCGAAUCCUCUAUUGGCAGG
aly-miR399f-3p
Arabidopsis lyrata
UGCCAAAGGAGAUUUGCCCUG
aly-miR399f-5p
Arabidopsis lyrata
GGGCAAGAUCACCAUUGGCAGA
aly-miR399g-3p
Arabidopsis lyrata
UGCCAAAGGAGAUUUGCCCCG
aly-miR399g-5p
Arabidopsis lyrata
GGGCAAAUACUCCAUUGGCAGA
aly-miR399h-3p
Arabidopsis lyrata
UGCCAAAGGAGAUUUGCCCGG
aly-miR399h-5p
Arabidopsis lyrata
GGGCAAGAUCUCUAUUGGCAGG
aly-miR399i-3p
Arabidopsis lyrata
UGCCAAAGGAGAUUUGCCCCG
aly-miR399i-5p
Arabidopsis lyrata
GGGCAAAUACUCCAUUGGCAGA
ath-miR399a
Arabidopsis thaliana
UGCCAAAGGAGAUUUGCCCUG
ath-miR399b
Arabidopsis thaliana
UGCCAAAGGAGAGUUGCCCUG
ath-miR399c-3p
Arabidopsis thaliana
UGCCAAAGGAGAGUUGCCCUG
ath-miR399c-5p
Arabidopsis thaliana
GGGCAUCUUUCUAUUGGCAGG
ath-miR399d
Arabidopsis thaliana
UGCCAAAGGAGAUUUGCCCCG
ath-miR399e
Arabidopsis thaliana
UGCCAAAGGAGAUUUGCCUCG
ath-miR399f
Arabidopsis thaliana
UGCCAAAGGAGAUUUGCCCGG
bdi-miR399b
Brachypodium distachyon
UGCCAAAGGAGAAUUGCCCUG
bdi-miR399c
Brachypodium distachyon
UGCCAAAGGAGAAUUGCCCUG
bdi-miR399d
Brachypodium distachyon
UGCCAAAGGAGAUUUGCCCGG
bra-miR399e
Brassica rapa
UGCCAAAGGAGAUUUGCCCGG
bra-miR399f
Brassica rapa
UGCCAAAGGAGAUUUGCCCGG
bra-miR399g
Brassica rapa
UGCCAAAGGAGAUUUGCCCGG
bra-miR399h
Brassica rapa
UGCCAAAGGAGAGUUGCCCU
cru-miR399a
Capsella rubella
UGCCAAAGGAGAGUUGCCCUG
cru-miR399b
Capsella rubella
UGCCAAAGGAGAUUUGCCCGG
cru-miR399c
Capsella rubella
UGCCAAAGGAGAUUUGCCCGG
cru-miR399d
Capsella rubella
UGCCAAAGGAGAUUUGCCCGG
cru-miR399e
Capsella rubella
UGCCAAAGGAGAGUUGCCCUG
csi-miR399a-3p
Citrus sinensis
UGCCAAAGGAGAUUUGCCCGG
csi-miR399a-5p
Citrus sinensis
GGGCAACAUCUCCAUUGGCAGG
csi-miR399b-3p
Citrus sinensis
UGCCAAAGGAGAGUUGCCCUA
csi-miR399c-3p
Citrus sinensis
UGCCAAAGGAGAAUUGCCCUG
csi-miR399d-3p
Citrus sinensis
UGCCAAAGGAGAGUUGCCCUG
csi-miR399d-5p
Citrus sinensis
GGGCACCUCUUACUUGGCAUG
csi-miR399e-3p
Citrus sinensis
UGCCAAAGGAGAUUUGCCCGG
csi-miR399e-5p
Citrus sinensis
GGGCAAUUCUCUAUUGGCAGU
csi-miR399f-3p
Citrus sinensis
CGCCAAAGGAGAAUUGCCCUG
csi-miR399f-5p
Citrus sinensis
GGGCAAUUCUCCUUUGGCAGA
dca-miR399-b2.0r1-4355
Daucus carota
GGGCAAUACUCCACUGGCAGU
dca-miR399-b2.0r1-4356
Daucus carota
GGGCAAUACUCCACUGGCAGU
esa-miR399a
Eutrema salsugineum
UGCCAAAGGAGAGUUGCCCUG
esa-miR399b
Eutrema salsugineum
UGCCAAAGGAGAGUUGCCCUG
fve-miR399a
Fragaria vesca
UGCCAAAGGAGAGUUGCCCUG
fve-miR399b
Fragaria vesca
AGCCAAAGGAGAAUUGCCCUG
gma-miR399a
Glycine max
UGCCAAAGGAGAGUUGCCCUG
gma-miR399b
Glycine max
UGCCAAAGGAGAGUUGCCCUG
gma-miR399c
Glycine max
UGCCAAAGGAGAGUUGCCCUG
gma-miR399d
Glycine max
UGCCAAAGGAGAUUUGCCCAG
gma-miR399e
Glycine max
UGCCAAAGGAGAUUUGCCCAG
gma-miR399f
Glycine max
UGCCAAAGGAGAUUUGCCCAG
gma-miR399g
Glycine max
UGCCAAAGGAGAUUUGCCCAG
gma-miR399h
Glycine max
UGCCAAAGGAGAGUUGCCCUG
gma-miR399i
Glycine max
UGCCAAAGGAGAAUUGCCCUG
gma-miR399j
Glycine max
UGCCAAAGGAGAUUUGCCCUG
gma-miR399k
Glycine max
UGCCAAAGGAGAUUUGCCCUG
gra-miR399
Gossypium raimondii
GGGCACCUCUCACUUAGGCAGG
hvu-miR399
Hordeum vulgare
UGCCAAAGGAGAUUUGCCCCG
lus-miR399a
Linum usitatissimum
UGCCAAAGGAGAUUUGCCCGG
lus-miR399b
Linum usitatissimum
UGCCAAAGGAGAAUUGCCCUG
lus-miR399c
Linum usitatissimum
UGCCAAAGGAGAUUUGCCCGG
lus-miR399d
Linum usitatissimum
UGCCAAAGGAGAAUUGCCCUG
lus-miR399e
Linum usitatissimum
UGCCAAAGGAGAUUUGCCCGG
lus-miR399f
Linum usitatissimum
UGCCAAAGGAGAUUUGCCCAG
lus-miR399g
Linum usitatissimum
UGCCAAAGGAGAUUUGCCCAG
mac-miR399a
Musa acuminata
GCCAAAGGAGACUUGCCCUA
mac-miR399b
Musa acuminata
UGCCAAAGGAGAAUUGCCCUG
mac-miR399d
Musa acuminata
UGCCAAAGGAGAAUUGCCCUG
mdm-miR399a
Malus domestica
UGCCAAAGGAGAAUUGCCCUG
mdm-miR399b
Malus domestica
UGCCAAAGGAGAAUUGCCCUG
mdm-miR399c
Malus domestica
UGCCAAAGGAGAAUUGCCCUG
mdm-miR399d
Malus domestica
UGCCAAAGGAGAGUUGCCCUA
mdm-miR399e
Malus domestica
UGCCAAAGGAGAUUUGCUCGG
mdm-miR399f
Malus domestica
UGCCAAAGGAGAUUUGCUCGG
mdm-miR399g
Malus domestica
UGCCAAAGGAGAUUUGCUCGG
mdm-miR399h
Malus domestica
UGCCAAAGGAGAUUUGCUCGG
mdm-miR399i
Malus domestica
UGCCAAAGGAGAGUUGCCCUG
mdm-miR399j
Malus domestica
UGCCAAAGGAGAGUUGCCCUG
mdm-miR399k
Malus domestica
UGCCAAAGGAGAGUUGCCCUU
mes-miR399a
Manihot esculenta
UGCCAAAGGAGAAUUGCCCUG
mes-miR399b
Manihot esculenta
UGCCAAAGGAGAUUUGCCCGG
mes-miR399c
Manihot esculenta
UGCCAAAGGAGAUUUGCCCGG
mes-miR399d
Manihot esculenta
UGCCAAAGGAGAUUUGCCCGG
mes-miR399e
Manihot esculenta
UGCCAAAGGAGAUUUGCUCGG
mes-miR399f
Manihot esculenta
UGCCAAAGGAGAGUUGCCCUG
mes-miR399g
Manihot esculenta
UGCCAAAGGAGAUUUGCCCGG
mes-miR399h
Manihot esculenta
GGGCACCUCUCGCUUGGCAGG
mtr-miR399a
Medicago truncatula
UGCCAAAGGAGAUUUGCCCAG
mtr-miR399c
Medicago truncatula
UGCCAAAGGAGAUUUGCCCUG
mtr-miR399e
Medicago truncatula
UGCCAAAGGAGAUUUGCCCAG
mtr-miR399f
Medicago truncatula
UGCCAAAGGAGAUUUGCCCAG
mtr-miR399g
Medicago truncatula
UGCCAAAGGAGAUUUGCCCAG
mtr-miR399h
Medicago truncatula
UGCCAAAGGAGAUUUGCCCUG
mtr-miR399i
Medicago truncatula
UGCCAAAGGAGAUUUGCCCUG
mtr-miR399j
Medicago truncatula
CGCCAAAGAAGAUUUGCCCCG
mtr-miR399k
Medicago truncatula
UGCCAAAGAAGAUUUGCCCUG
mtr-miR399l
Medicago truncatula
UGCCAAAGGAGAGUUGCCCUG
mtr-miR399p
Medicago truncatula
UGCCAAAGGAGAGUUGCCCUG
mtr-miR399r
Medicago truncatula
UGCCAAAGAAGAUUUGCCCCG
mtr-miR399s-3p
Medicago truncatula
UGCCAAAGGAGAUUUGCCCAG
mtr-miR399s-5p
Medicago truncatula
GGGUGAGUUCUCCAUUGGCAGG
mtr-miR399t-3p
Medicago truncatula
UGCCAAAGGAGAUUUGCCCAG
mtr-miR399t-5p
Medicago truncatula
GGGUGAGUUCUCCAUUGGCAGGU
osa-miR399a
Oryza sativa
UGCCAAAGGAGAAUUGCCCUG
osa-miR399b
Oryza sativa
UGCCAAAGGAGAAUUGCCCUG
osa-miR399c
Oryza sativa
UGCCAAAGGAGAAUUGCCCUG
osa-miR399d
Oryza sativa
UGCCAAAGGAGAGUUGCCCUG
osa-miR399e
Oryza sativa
UGCCAAAGGAGAUUUGCCCAG
osa-miR399f
Oryza sativa
UGCCAAAGGAGAUUUGCCCAG
osa-miR399g
Oryza sativa
UGCCAAAGGAGAUUUGCCCAG
osa-miR399h
Oryza sativa
UGCCAAAGGAGACUUGCCCAG
osa-miR399k
Oryza sativa
UGCCAAAGGAAAUUUGCCCCG
pha-miR399a
Panicum hallii
UGCCAAAGGAGAAUUGCCCUG
pha-miR399b
Panicum hallii
UGCCAAAGGAGAGUUGCCCUG
pha-miR399c
Panicum hallii
UGCCAAAGGAGAGUUGCCCUG
ppe-miR399a
Prunus persica
CGCCAAAGGAGAGUUGCCCUU
ppe-miR399b
Prunus persica
UCUGCCAAAGGAGAAUUGCCC
ppe-miR399c
Prunus persica
UGCCAAAGAAGAGUUGCCCUA
ppe-miR399d
Prunus persica
UGCCAAAGAAGAGUUGCCCUA
ppe-miR399e
Prunus persica
UGCCAAAGAAGAGUUGCCCUA
ppe-miR399f
Prunus persica
UGCCAAAGAAGAGUUGCCCUA
ppe-miR399g
Prunus persica
UGCCAAAGAAGAGUUGCCCUA
ppe-miR399h
Prunus persica
UGCCAAAGAAGAGUUGCCCUA
ppe-miR399i
Prunus persica
UGCCAAAGAAGAGUUGCCCUA
ppe-miR399j
Prunus persica
UGCCAAAGAAGAGUUGCCCUA
ppe-miR399k
Prunus persica
UGCCAAAGAAGAGUUGCCCUA
ppe-miR399l
Prunus persica
UGCCAAAGAAGAGUUGCCCUA
ppe-miR399m
Prunus persica
UGCCAAAGGAGAUUUGCUCGG
ppe-miR399n
Prunus persica
UGCCAAAGGAGAUUUGCUCGG
ptc-miR399a
Populus trichocarpa
UGCCAAAGGAGAUUUGCCCCG
ptc-miR399b
Populus trichocarpa
UGCCAAAGGAGAUUUGCCCGG
ptc-miR399c
Populus trichocarpa
UGCCAAAGGAGAUUUGCUCAC
ptc-miR399d
Populus trichocarpa
UGCCAAAGAAGAUUUGCCCCG
ptc-miR399e
Populus trichocarpa
CGCCAAAGGAGAGUUGCCCUC
ptc-miR399f
Populus trichocarpa
UGCCAAAGGAGAAUUGCCCUG
ptc-miR399g
Populus trichocarpa
UGCCAAAGGAGAAUUGCCCUG
ptc-miR399h
Populus trichocarpa
UGCCAAAGGAGAGUUUCCCUG
ptc-miR399j
Populus trichocarpa
UGCCAAAGGAGAUUUGUCCGG
pvi-miR399b
Panicum virgatum
UGCCAAAGGAGAGUUGCCCUG
pvi-miR399c
Panicum virgatum
UGCCAAAGGAGAGUUGCCCUG
pvu-miR399a
Phaseolus vulgaris
UGCCAAAGGAGAGUUGCCCUG
rco-miR399a
Ricinus communis
UGCCAAAGGAGAGUUGCCCUG
rco-miR399b
Ricinus communis
UGCCAAAGGAGAUUUGCCCGG
rco-miR399c
Ricinus communis
UGCCAAAGGAGAUUUGCCCGG
rco-miR399e
Ricinus communis
UGCCAAAGGAGAUUUGCCCAG
rco-miR399f
Ricinus communis
UGCCAAAGGAGAUUUGCUCAC
sbi-miR399a
Sorghum bicolor
UGCCAAAGGAGAAUUGCCCUG
sbi-miR399c
Sorghum bicolor
UGCCAAAGGAGAAUUGCCCUG
sbi-miR399d
Sorghum bicolor
UGCCAAAGGAGAGUUGCCCUG
sbi-miR399e
Sorghum bicolor
UGCCAAAGGAGAUUUGCCCAG
sbi-miR399f
Sorghum bicolor
UGCCAAAGGAGAUUUGCCCAG
sbi-miR399g
Sorghum bicolor
UGCCAAAGGAAAUUUGCCCCG
sbi-miR399h
Sorghum bicolor
UGCCAAAGGAGAAUUGCCCUG
sbi-miR399i
Sorghum bicolor
UGCCAAAGGAGAGUUGCCCUG
sbi-miR399j
Sorghum bicolor
UGCCAAAGGAGAAUUGCCCUG
sbi-miR399k
Sorghum bicolor
UGCCAAAGGGGAUUUGCCCGG
sit-miR399a
Setaria italica
UGCCAAAGGAGAAUUGCCCUG
sit-miR399b
Setaria italica
UGCCAAAGGAGAAUUGCCCUG
sit-miR399c
Setaria italica
UGCCAAAGGAGAAUUGCCCUG
sly-miR399
Solanum lycopersicum
UGCCAAAGGAGAGUUGCCCUA
sly-miR399b
Solanum lycopersicum
GGGCUACUCUCUAUUGGCAUG
stu-miR399a-5p
Solanum tuberosum
GGGCUACUCUCUAUUGGCAUG
stu-miR399b-5p
Solanum tuberosum
GGGCUACUCUCUAUUGGCAUG
stu-miR399c-5p
Solanum tuberosum
GGGCUACUCUCUAUUGGCAUG
stu-miR399d-5p
Solanum tuberosum
GGGCUACUCUCUAUUGGCAUG
stu-miR399e-5p
Solanum tuberosum
GGGCUACUCUCUAUUGGCAUG
stu-miR399f-5p
Solanum tuberosum
GGGCUACUCUCUAUUGGCAUG
stu-miR399g-3p
Solanum tuberosum
CGCCAAAGGGGAGCUGCCCUA
stu-miR399g-5p
Solanum tuberosum
GGGCUACUCUCUAUUGGCAUG
stu-miR399h
Solanum tuberosum
GGGCUACUCUCUAUUGGCAUG
stu-miR399i-3p
Solanum tuberosum
UGCCAAAGGAGAGUUGCCCUA
stu-miR399i-5p
Solanum tuberosum
GGGCUACACUCUAUUGGCAUG
stu-miR399j-3p
Solanum tuberosum
CGCCAAAGGAGAGCUGCCCUG
stu-miR399j-5p
Solanum tuberosum
GGGCUACUCUCUAUUGGCAUA
stu-miR399k-3p
Solanum tuberosum
CGCCAAAGGAGAGCUGCCCUG
stu-miR399k-5p
Solanum tuberosum
GGGCUACUCUCUAUUGGCAUG
stu-miR399l-3p
Solanum tuberosum
CGCCAAAGGAGAGCUGCCCUG
stu-miR399l-5p
Solanum tuberosum
GGGCUACUCUCUAUUGGCAUG
stu-miR399m-3p
Solanum tuberosum
CGCCAAAGGAGAGCUGCCCUG
stu-miR399m-5p
Solanum tuberosum
GGGCUACUCUCUAUUGGCAUG
stu-miR399n-3p
Solanum tuberosum
CGCCAAAGGAGAGCUGCCCUG
stu-miR399n-5p
Solanum tuberosum
GGGCUACUCUCUAUUGGCAUG
stu-miR399o-3p
Solanum tuberosum
CGCCAAAGGAGAGCUGCCCUG
stu-miR399o-5p
Solanum tuberosum
GGGCUACUCUCUAUUGGCAUG
tae-miR399
Triticum aestivum
UGCCAAAGGAGAAUUGCCC
tcc-miR399a
Theobroma cacao
CGCCAAAGGAGAGUUGCCCUG
tcc-miR399b
Theobroma cacao
UGCCAAAGGAGAUUUGCCCGG
tcc-miR399c
Theobroma cacao
UGCCAAUGGAGAUUUGCCCAG
tcc-miR399d
Theobroma cacao
UGCCAAAGGAGAUUUGCCCGG
tcc-miR399e
Theobroma cacao
CGCCAAAGGAGAAUUGCCCUG
tcc-miR399f
Theobroma cacao
UGCCAGAGGAGAUUUGCCCUG
tcc-miR399g
Theobroma cacao
UGCCAAAGGAGAAUUGCCCUG
tcc-miR399h
Theobroma cacao
UGCCAAAGGAGAUUUGCCCCG
tcc-miR399i
Theobroma cacao
UGCCAAAGGAGAGUUGCCCUG
vvi-miR399a
Vitis vinifera
UGCCAAAGGAGAAUUGCCCUG
vvi-miR399b
Vitis vinifera
UGCCAAAGGAGAGUUGCCCUG
vvi-miR399c
Vitis vinifera
UGCCAAAGGAGAGUUGCCCUG
vvi-miR399d
Vitis vinifera
UGCCAAAGGAGAUUUGCUCGU
vvi-miR399e
Vitis vinifera
UGCCAAAGGAGAUUUGCCCGG
vvi-miR399f
Vitis vinifera
UGCCGAAGGAGAUUUGUCCUG
vvi-miR399g
Vitis vinifera
UGCCAAAGGAGAUUUGCCCCU
vvi-miR399h
Vitis vinifera
UGCCAAAGGAGAAUUGCCCUG
vvi-miR399i
Vitis vinifera
CGCCAAAGGAGAGUUGCCCUG
zma-miR399a-3p
Zea mays
UGCCAAAGGAGAAUUGCCCUG
zma-miR399c-3p
Zea mays
UGCCAAAGGAGAAUUGCCCUG
zma-miR399e-3p
Zea mays
UGCCAAAGGAGAGUUGCCCUG
zma-miR399f-3p
Zea mays
UGCCAAAGGAAAUUUGCCCCG
zma-miR399g-3p
Zea mays
UGCCAAAGGGGAUUUGCCCGG
zma-miR399h-3p
Zea mays
UGCCAAAGGAGAAUUGCCCUG
zma-miR399i-3p
Zea mays
UGCCAAAGGAGAGUUGCCCUG
zma-miR399j-3p
Zea mays
UGCCAAAGGAGAGUUGCCCUG