TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



mdm-miR399e
Malus domestica

Species
CAGGGCAAAGUCUCUUCUGGCAUGUAGCCACUUACAAAUUACAAAUUCUUAAUUCUGGCUGAGCAAGCUGGCCAGCCUUGCAUUACUUUUGUAGUGUGCUUUAUGCCAAAGGAGAUUUGCUCGG

miRBase
CA       G      C       U   -    U     UUACAAAUUCU    U -U     A  AA 
  GGGCAAA UCUCUU UGGCAUG AGC CACU ACAAA           UAAU C  GGCUG GC  G
  ||||||| |||||| ||||||| ||| |||| |||||           |||| |  ||||| ||   
  CUCGUUU AGAGGA ACCGUAU UCG GUGA UGUUU           AUUA G  CCGAC CG  G
GG       -      A       U   U    -     ---------UC    C UU     -  GU 

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

mdm-miR399j         UGCCAAAGGAGAGUUGCCCUG
mes-miR399f         UGCCAAAGGAGAGUUGCCCUG
mdm-miR399i         UGCCAAAGGAGAGUUGCCCUG
cru-miR399a         UGCCAAAGGAGAGUUGCCCUG
ptc-miR399h         UGCCAAAGGAGAGUUUCCCUG
cru-miR399e         UGCCAAAGGAGAGUUGCCCUG
ath-miR399c-3p      UGCCAAAGGAGAGUUGCCCUG
sbi-miR399d         UGCCAAAGGAGAGUUGCCCUG
zma-miR399e-3p      UGCCAAAGGAGAGUUGCCCUG
vvi-miR399b         UGCCAAAGGAGAGUUGCCCUG
tcc-miR399i         UGCCAAAGGAGAGUUGCCCUG
gma-miR399a         UGCCAAAGGAGAGUUGCCCUG
gma-miR399b         UGCCAAAGGAGAGUUGCCCUG
gma-miR399c         UGCCAAAGGAGAGUUGCCCUG
fve-miR399a         UGCCAAAGGAGAGUUGCCCUG
esa-miR399b         UGCCAAAGGAGAGUUGCCCUG
pvi-miR399b         UGCCAAAGGAGAGUUGCCCUG
pvi-miR399c         UGCCAAAGGAGAGUUGCCCUG
zma-miR399i-3p      UGCCAAAGGAGAGUUGCCCUG
rco-miR399a         UGCCAAAGGAGAGUUGCCCUG
csi-miR399d-3p      UGCCAAAGGAGAGUUGCCCUG
aly-miR399c-3p      UGCCAAAGGAGAGUUGCCCUG
aly-miR399b-3p      UGCCAAAGGAGAGUUGCCCUG
zma-miR399j-3p      UGCCAAAGGAGAGUUGCCCUG
pha-miR399c         UGCCAAAGGAGAGUUGCCCUG
pha-miR399b         UGCCAAAGGAGAGUUGCCCUG
gma-miR399h         UGCCAAAGGAGAGUUGCCCUG
pvu-miR399a         UGCCAAAGGAGAGUUGCCCUG
vvi-miR399c         UGCCAAAGGAGAGUUGCCCUG
mtr-miR399p         UGCCAAAGGAGAGUUGCCCUG
mtr-miR399l         UGCCAAAGGAGAGUUGCCCUG
sbi-miR399i         UGCCAAAGGAGAGUUGCCCUG
ath-miR399b         UGCCAAAGGAGAGUUGCCCUG
osa-miR399d         UGCCAAAGGAGAGUUGCCCUG
esa-miR399a         UGCCAAAGGAGAGUUGCCCUG
tae-miR399          UGCCAAAGGAGAAUUGCCC--
mac-miR399b         UGCCAAAGGAGAAUUGCCCUG
mac-miR399d         UGCCAAAGGAGAAUUGCCCUG
pha-miR399a         UGCCAAAGGAGAAUUGCCCUG
sit-miR399a         UGCCAAAGGAGAAUUGCCCUG
sit-miR399b         UGCCAAAGGAGAAUUGCCCUG
sit-miR399c         UGCCAAAGGAGAAUUGCCCUG
osa-miR399a         UGCCAAAGGAGAAUUGCCCUG
osa-miR399b         UGCCAAAGGAGAAUUGCCCUG
osa-miR399c         UGCCAAAGGAGAAUUGCCCUG
sbi-miR399a         UGCCAAAGGAGAAUUGCCCUG
sbi-miR399c         UGCCAAAGGAGAAUUGCCCUG
zma-miR399a-3p      UGCCAAAGGAGAAUUGCCCUG
zma-miR399c-3p      UGCCAAAGGAGAAUUGCCCUG
sbi-miR399h         UGCCAAAGGAGAAUUGCCCUG
ptc-miR399f         UGCCAAAGGAGAAUUGCCCUG
ptc-miR399g         UGCCAAAGGAGAAUUGCCCUG
vvi-miR399a         UGCCAAAGGAGAAUUGCCCUG
vvi-miR399h         UGCCAAAGGAGAAUUGCCCUG
sbi-miR399j         UGCCAAAGGAGAAUUGCCCUG
zma-miR399h-3p      UGCCAAAGGAGAAUUGCCCUG
csi-miR399c-3p      UGCCAAAGGAGAAUUGCCCUG
tcc-miR399g         UGCCAAAGGAGAAUUGCCCUG
bdi-miR399b         UGCCAAAGGAGAAUUGCCCUG
mes-miR399a         UGCCAAAGGAGAAUUGCCCUG
lus-miR399b         UGCCAAAGGAGAAUUGCCCUG
lus-miR399d         UGCCAAAGGAGAAUUGCCCUG
mdm-miR399a         UGCCAAAGGAGAAUUGCCCUG
bdi-miR399c         UGCCAAAGGAGAAUUGCCCUG
gma-miR399i         UGCCAAAGGAGAAUUGCCCUG
mdm-miR399b         UGCCAAAGGAGAAUUGCCCUG
mdm-miR399c         UGCCAAAGGAGAAUUGCCCUG
fve-miR399b         AGCCAAAGGAGAAUUGCCCUG
ath-miR399a         UGCCAAAGGAGAUUUGCCCUG
tcc-miR399f         UGCCAGAGGAGAUUUGCCCUG
mtr-miR399c         UGCCAAAGGAGAUUUGCCCUG
mtr-miR399h         UGCCAAAGGAGAUUUGCCCUG
mtr-miR399i         UGCCAAAGGAGAUUUGCCCUG
aly-miR399f-3p      UGCCAAAGGAGAUUUGCCCUG
gma-miR399j         UGCCAAAGGAGAUUUGCCCUG
gma-miR399k         UGCCAAAGGAGAUUUGCCCUG
osa-miR399e         UGCCAAAGGAGAUUUGCCCAG
tcc-miR399c         UGCCAAUGGAGAUUUGCCCAG
osa-miR399f         UGCCAAAGGAGAUUUGCCCAG
osa-miR399g         UGCCAAAGGAGAUUUGCCCAG
sbi-miR399e         UGCCAAAGGAGAUUUGCCCAG
sbi-miR399f         UGCCAAAGGAGAUUUGCCCAG
mtr-miR399a         UGCCAAAGGAGAUUUGCCCAG
mtr-miR399e         UGCCAAAGGAGAUUUGCCCAG
mtr-miR399f         UGCCAAAGGAGAUUUGCCCAG
mtr-miR399g         UGCCAAAGGAGAUUUGCCCAG
rco-miR399e         UGCCAAAGGAGAUUUGCCCAG
gma-miR399d         UGCCAAAGGAGAUUUGCCCAG
gma-miR399e         UGCCAAAGGAGAUUUGCCCAG
gma-miR399f         UGCCAAAGGAGAUUUGCCCAG
gma-miR399g         UGCCAAAGGAGAUUUGCCCAG
lus-miR399f         UGCCAAAGGAGAUUUGCCCAG
lus-miR399g         UGCCAAAGGAGAUUUGCCCAG
mtr-miR399s-3p      UGCCAAAGGAGAUUUGCCCAG
mtr-miR399t-3p      UGCCAAAGGAGAUUUGCCCAG
osa-miR399h         UGCCAAAGGAGACUUGCCCAG
ptc-miR399j         UGCCAAAGGAGAUUUGUCCGG
vvi-miR399f         UGCCGAAGGAGAUUUGUCCUG
zma-miR399g-3p      UGCCAAAGGGGAUUUGCCCGG
sbi-miR399k         UGCCAAAGGGGAUUUGCCCGG
bra-miR399e         UGCCAAAGGAGAUUUGCCCGG
bra-miR399f         UGCCAAAGGAGAUUUGCCCGG
bra-miR399g         UGCCAAAGGAGAUUUGCCCGG
cru-miR399b         UGCCAAAGGAGAUUUGCCCGG
cru-miR399c         UGCCAAAGGAGAUUUGCCCGG
cru-miR399d         UGCCAAAGGAGAUUUGCCCGG
ath-miR399f         UGCCAAAGGAGAUUUGCCCGG
ptc-miR399b         UGCCAAAGGAGAUUUGCCCGG
vvi-miR399e         UGCCAAAGGAGAUUUGCCCGG
rco-miR399b         UGCCAAAGGAGAUUUGCCCGG
rco-miR399c         UGCCAAAGGAGAUUUGCCCGG
aly-miR399a-3p      UGCCAAAGGAGAUUUGCCCGG
aly-miR399h-3p      UGCCAAAGGAGAUUUGCCCGG
csi-miR399a-3p      UGCCAAAGGAGAUUUGCCCGG
tcc-miR399b         UGCCAAAGGAGAUUUGCCCGG
tcc-miR399d         UGCCAAAGGAGAUUUGCCCGG
lus-miR399a         UGCCAAAGGAGAUUUGCCCGG
lus-miR399c         UGCCAAAGGAGAUUUGCCCGG
lus-miR399e         UGCCAAAGGAGAUUUGCCCGG
mes-miR399b         UGCCAAAGGAGAUUUGCCCGG
mes-miR399c         UGCCAAAGGAGAUUUGCCCGG
mes-miR399d         UGCCAAAGGAGAUUUGCCCGG
mes-miR399g         UGCCAAAGGAGAUUUGCCCGG
bdi-miR399d         UGCCAAAGGAGAUUUGCCCGG
csi-miR399e-3p      UGCCAAAGGAGAUUUGCCCGG
mdm-miR399e         UGCCAAAGGAGAUUUGCUCGG
mdm-miR399f         UGCCAAAGGAGAUUUGCUCGG
mdm-miR399g         UGCCAAAGGAGAUUUGCUCGG
mdm-miR399h         UGCCAAAGGAGAUUUGCUCGG
mes-miR399e         UGCCAAAGGAGAUUUGCUCGG
ppe-miR399m         UGCCAAAGGAGAUUUGCUCGG
ppe-miR399n         UGCCAAAGGAGAUUUGCUCGG
ptc-miR399c         UGCCAAAGGAGAUUUGCUCAC
rco-miR399f         UGCCAAAGGAGAUUUGCUCAC
vvi-miR399d         UGCCAAAGGAGAUUUGCUCGU
ath-miR399e         UGCCAAAGGAGAUUUGCCUCG
aly-miR399e-3p      UGCCAAAGGAGAUUUGCCUCG
osa-miR399k         UGCCAAAGGAAAUUUGCCCCG
sbi-miR399g         UGCCAAAGGAAAUUUGCCCCG
zma-miR399f-3p      UGCCAAAGGAAAUUUGCCCCG
hvu-miR399          UGCCAAAGGAGAUUUGCCCCG
ath-miR399d         UGCCAAAGGAGAUUUGCCCCG
ptc-miR399a         UGCCAAAGGAGAUUUGCCCCG
aly-miR399d-3p      UGCCAAAGGAGAUUUGCCCCG
aly-miR399g-3p      UGCCAAAGGAGAUUUGCCCCG
aly-miR399i-3p      UGCCAAAGGAGAUUUGCCCCG
tcc-miR399h         UGCCAAAGGAGAUUUGCCCCG
vvi-miR399g         UGCCAAAGGAGAUUUGCCCCU
ptc-miR399d         UGCCAAAGAAGAUUUGCCCCG
mtr-miR399r         UGCCAAAGAAGAUUUGCCCCG
mtr-miR399j         CGCCAAAGAAGAUUUGCCCCG
mtr-miR399k         UGCCAAAGAAGAUUUGCCCUG
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