TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

ath-miR399c-5p

Organism

Arabidopsis thaliana

Species

Mature miRNA Sequence(5'-3')

GGGCAUCUUUCUAUUGGCAGG

miRBase

Precursor miRNA Sequence(5'-3')

GGAGCAGUAAUAGGGCAUCUUUCUAUUGGCAGGCGACUUGGCUAUUUGUAUCUUUUGUGUUCUUGACUAUUGGCUAUGUCACUUGCCAAAGGAGAGUUGCCCUGUCACUGCUUC

miRBase

Precursor miRNA Structure(5'-3') 

        A        U      A        C   U      UUU  AUCUUUU 
GGAGCAGU AUAGGGCA CUUUCU UUGGCAGG GAC UGGCUA   GU       G
|||||||| |||||||| |||||| |||||||| ||| ||||||   ||        
CUUCGUCA UGUCCCGU GAGAGG AACCGUUC CUG AUCGGU   CA       U
        C        U      A        A   U      UAU  GUUCUUG

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ath-miR399c-5p      GGGCAUCUUUCUAUUGGCAGG
aly-miR399c-5p      GGGCAUCUUUCUAUUGGCAGG
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