TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

aly-miR399c-5p

Organism

Arabidopsis lyrata

Species

Mature miRNA Sequence(5'-3')

GGGCAUCUUUCUAUUGGCAGG

miRBase

Precursor miRNA Sequence(5'-3')

UAAGCGGAGCAGUAAUAGGGCAUCUUUCUAUUGGCAGGAGACUCGGCUAUUUGUAUCUUUUGUGUUCUUGGCUAUUGGCUAUGUCACUUGCCAAAGGAGAGUUGCCCUGUCACUACUUCCGCUUA

miRBase

Precursor miRNA Structure(5'-3') 

        - C   A        U      A        A   UC     UUU  AUCUUUU 
UAAGCGGA G AGU AUAGGGCA CUUUCU UUGGCAGG GAC  GGCUA   GU       G
|||||||| | ||| |||||||| |||||| |||||||| |||  |||||   ||        
AUUCGCCU C UCA UGUCCCGU GAGAGG AACCGUUC CUG  UCGGU   CG       U
        U A   C        U      A        A   UA     UAU  GUUCUUG

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ath-miR399c-5p      GGGCAUCUUUCUAUUGGCAGG
aly-miR399c-5p      GGGCAUCUUUCUAUUGGCAGG
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