TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.

miRNA Family

miRNA
Species
Sequence
aly-miR398a-3p
Arabidopsis lyrata
UGUGUUCUCAGGUCACCCCUU
aly-miR398a-5p
Arabidopsis lyrata
GGAGUGUCAUGAGAACACAGA
aly-miR398b-3p
Arabidopsis lyrata
UGUGUUCUCAGGUCACCCCUG
aly-miR398b-5p
Arabidopsis lyrata
GGGUUGAUAUGAGGACACAUG
aly-miR398c-3p
Arabidopsis lyrata
UGUGUUAACUCAGGUCACCCCUG
aly-miR398c-5p
Arabidopsis lyrata
GGGUCGACAUGAGAACAUAUG
ath-miR398a-3p
Arabidopsis thaliana
UGUGUUCUCAGGUCACCCCUU
ath-miR398b-3p
Arabidopsis thaliana
UGUGUUCUCAGGUCACCCCUG
ath-miR398b-5p
Arabidopsis thaliana
AGGGUUGAUAUGAGAACACAC
ath-miR398c-3p
Arabidopsis thaliana
UGUGUUCUCAGGUCACCCCUG
ath-miR398c-5p
Arabidopsis thaliana
AGGGUUGAUAUGAGAACACAC
atr-miR398
Amborella trichopoda
UGUGUUCCCAGGUCGCCCCUG
bdi-miR398a
Brachypodium distachyon
UGUGUUCUCAGGUCGCCCCUG
bdi-miR398b
Brachypodium distachyon
CAGGAGUGUCACUGAGAACACA
bol-miR398
Brassica oleracea
UGUGUUCUCAGGUCACCCCU
bra-miR398a
Brassica rapa
UGUGUUCUCAGGUCACCCCUG
bra-miR398b
Brassica rapa
UGUGUUCUCAGGUCACCCCUG
bra-miR398c
Brassica rapa
UGUGUUCUCAGGUCACCCCUU
bra-miR398d
Brassica rapa
UGUGUUCUCAGGUCACCCCUU
cru-miR398a
Capsella rubella
UGUGUUCUCAGGUCACCCCU
cru-miR398b
Capsella rubella
GUGUUCUCAGGUCACCCCUGC
cru-miR398c
Capsella rubella
GUGUUCUCAGGUCACCCCUGC
csi-miR398a-3p
Citrus sinensis
UGUGUUCUCAGGUCACCCCUU
csi-miR398b-3p
Citrus sinensis
UGUGUUCUCAGGUCGCCCCUG
dca-miR398-b2.0r1-1847
Daucus carota
UGUGUUCUCAGGUCGCCCCUG
esa-miR398a
Eutrema salsugineum
UGUGUUCUCAGGUCACCCCU
esa-miR398b
Eutrema salsugineum
UGUGUUCUCAGGUCACCCCUG
gma-miR398a
Glycine max
UGUGUUCUCAGGUCACCCCUU
gma-miR398b-3p
Glycine max
UGUGUUCUCAGGUCACCCCUU
gma-miR398c
Glycine max
UGUGUUCUCAGGUCGCCCCUG
gma-miR398d
Glycine max
UGUGUUCUCAGGUCGCCCCUG
gra-miR398
Gossypium raimondii
UGUGUUCUCAGGUCACCCCUU
lus-miR398a
Linum usitatissimum
UGUGUUCUCAGGUCGCCCCUG
lus-miR398b
Linum usitatissimum
UGUGUUCUCAGGUCACCCCU
lus-miR398c
Linum usitatissimum
UGUGUUCUCAGGUCACCCCU
lus-miR398d
Linum usitatissimum
UGUGUUCUCAGGUCACCCCUC
lus-miR398e
Linum usitatissimum
UGUGUUCUCAGGUCACCCCUC
lus-miR398f
Linum usitatissimum
GGUGUUCUCAGGUCGCCCCUG
mac-miR398
Musa acuminata
UGUGUUCUCAGGUCGCCCCUG
mdm-miR398a
Malus domestica
UGUGUUCUCAGGUCACCCCUU
mdm-miR398b
Malus domestica
UGUGUUCUCAGGUCGCCCCUG
mdm-miR398c
Malus domestica
UGUGUUCUCAGGUCGCCCCUG
mes-miR398
Manihot esculenta
UGUGUUCUCAGGUCGCCCCUG
mtr-miR398a-3p
Medicago truncatula
UGUGUUCUCAGGUCACCCCUU
mtr-miR398a-5p
Medicago truncatula
GGAGUGACACUGAGAACACAAG
mtr-miR398b
Medicago truncatula
UGUGUUCUCAGGUCGCCCCUG
mtr-miR398c
Medicago truncatula
UGUGUUCUCAGGUCGCCCCUG
osa-miR398a
Oryza sativa
UGUGUUCUCAGGUCACCCCUU
osa-miR398b
Oryza sativa
UGUGUUCUCAGGUCGCCCCUG
pha-miR398
Panicum hallii
UGUGUUCUCAGGUCGCCCCCG
ppe-miR398a-3p
Prunus persica
UGUGUUCUCAGGUCGCCCCUG
ppe-miR398a-5p
Prunus persica
GGAGCGACCUGGGAUCACAUG
ppe-miR398b
Prunus persica
CGUGUUCUCAGGUCGCCCCUG
ptc-miR398a
Populus trichocarpa
UGUGUUCUCAGGUCACCCCUU
ptc-miR398b
Populus trichocarpa
UGUGUUCUCAGGUCGCCCCUG
ptc-miR398c-3p
Populus trichocarpa
UGUGUUCUCAGGUCGCCCCUG
ptc-miR398c-5p
Populus trichocarpa
GGAGCGACCUGAAAUCACAUG
pvi-miR398a
Panicum virgatum
UGUGUUCUCAGGUCGCCCCCG
pvi-miR398b
Panicum virgatum
GUGUUCUCAGGUCGCCCCCGC
rco-miR398a
Ricinus communis
UGUGUUCUCAGGUCACCCCUU
rco-miR398b
Ricinus communis
UGUGUUCUCAGGUCGCCCCUG
sbi-miR398
Sorghum bicolor
UGUGUUCUCAGGUCGCCCCCG
sit-miR398
Setaria italica
UGUGUUCUCAGGUCGCCCCCG
sly-miR398a
Solanum lycopersicum
UAUGUUCUCAGGUCGCCCCUG
stu-miR398a-3p
Solanum tuberosum
UAUGUUCUCAGGUCGCCCCUG
stu-miR398a-5p
Solanum tuberosum
GGGUUGAUUUGAGAACAUAUG
stu-miR398b-3p
Solanum tuberosum
UUGUGUUCUCAGGUCACCCCU
tae-miR398
Triticum aestivum
UGUGUUCUCAGGUCGCCCCCG
tcc-miR398a
Theobroma cacao
UGUGUUCUCAGGUCGCCCCUG
tcc-miR398b
Theobroma cacao
UGUGUUCUCAGGUCACCCCUU
vvi-miR398a
Vitis vinifera
UGUGUUCUCAGGUCACCCCUU
vvi-miR398b
Vitis vinifera
UGUGUUCUCAGGUCGCCCCUG
vvi-miR398c
Vitis vinifera
UGUGUUCUCAGGUCGCCCCUG
zma-miR398a-3p
Zea mays
UGUGUUCUCAGGUCGCCCCCG
zma-miR398b-3p
Zea mays
UGUGUUCUCAGGUCGCCCCCG