TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

ppe-miR398a-5p

Organism

Prunus persica

Species

Mature miRNA Sequence(5'-3')

GGAGCGACCUGGGAUCACAUG

miRBase

Precursor miRNA Sequence(5'-3')

AGAGGGGUUCCACAGGAGCGACCUGGGAUCACAUGCGUCCACCCUCACAUUAACACAAUGUGCUGCAUUGCUAGUGUAUUGUGCUCGAUGUGUUCUCAGGUCGCCCCUGCAGUACCUUC

miRBase

Precursor miRNA Structure(5'-3') 

A     GUU CA    A           U     G  UC   CCUC      ACA        
 GAGGG   C  CAGG GCGACCUGGGA CACAU CG  CAC    ACAUUA   CAAUGUG 
 |||||   |  |||| ||||||||||| ||||| ||  |||    ||||||   |||||| C
 CUUCC   G  GUCC CGCUGGACUCU GUGUA GC  GUG    UGUGAU   GUUACGC 
-     -AU AC    C           U     -  UC   -UUA      --C

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ptc-miR398c-5p      GGAGCGACCUGAAAUCACAUG
ppe-miR398a-5p      GGAGCGACCUGGGAUCACAUG
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