TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

ptc-miR398c-5p

Organism

Populus trichocarpa

Species

Mature miRNA Sequence(5'-3')

GGAGCGACCUGAAAUCACAUG

miRBase

Precursor miRNA Sequence(5'-3')

AGGAUUCCUACAGGAGCGACCUGAAAUCACAUGUGGGCUGCACCCUCCUGGGUUAUCUUGAGCAACAUGUGUUCUCAGGUCGCCCCUGCCGGGCUUU

miRBase

Precursor miRNA Structure(5'-3') 

AGGAU   UA    A         AAU       GG   -----GC    U 
     UCC  CAGG GCGACCUGA   CACAUGU  GCU       ACCC C
     |||  |||| |||||||||   |||||||  |||       ||||  
     GGG  GUCC CGCUGGACU   GUGUACA  CGA       UGGG G
-UUUC   CC    C         CUU       -A   GUUCUAU    U

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ptc-miR398c-5p      GGAGCGACCUGAAAUCACAUG
ppe-miR398a-5p      GGAGCGACCUGGGAUCACAUG
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