TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

mtr-miR398a-5p

Organism

Medicago truncatula

Species

Mature miRNA Sequence(5'-3')

GGAGUGACACUGAGAACACAAG

miRBase

Precursor miRNA Sequence(5'-3')

UCUCAGAGGAGUGACACUGAGAACACAAGAUUGAUUAAUCAUAUAAUGUAUUUGGUUGUUACUAGUUGAUUUUGUGUUCUCAGGUCACCCCUUUGAGU

miRBase

Precursor miRNA Structure(5'-3') 

U        A     A                     AUCAU     GU 
 CUCAGAGG GUGAC CUGAGAACACAAGAUUGAUUA     AUAAU  A
 |||||||| ||||| |||||||||||||||||||||     |||||  U
 GAGUUUCC CACUG GACUCUUGUGUUUUAGUUGAU     UGUUG  G
U        C     -                     --CAU     GU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

mtr-miR398a-5p      GGAGUGACACUGAGAACACAAG
aly-miR398a-5p      GGAGUGUCA-UGAGAACACAGA
                    ****** ** **********