TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

aly-miR398c-5p

Organism

Arabidopsis lyrata

Species

Mature miRNA Sequence(5'-3')

GGGUCGACAUGAGAACAUAUG

miRBase

Precursor miRNA Sequence(5'-3')

GGUAGUGGAUCUCGACAGGGUCGACAUGAGAACAUAUGAGCAAUCAACGGCUGUAAAUGACGCUACGUCAUUAUUACAUCUCUCGGUUUCAUGUGUUAACUCAGGUCACCCCUGCUGAGCUCUUUCUCUACC

miRBase

Precursor miRNA Structure(5'-3') 

     ---U   U    A     UC   A    --         GC    AAC  C     --        
GGUAG    GGA CUCG CAGGG  GAC UGAG  AACAUAUGA  AAUC   GG UGUAA  AUGACGC 
|||||    ||| |||| |||||  ||| ||||  |||||||||  ||||   || |||||  |||||| U
CCAUC    UCU GAGU GUCCC  CUG ACUC  UUGUGUACU  UUGG   UC ACAUU  UACUGCG 
     UCUU   C    C     CA   G    AA         --    CUC  U     AU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

aly-miR398c-5p      GGGUCGACAUGAGAACAUAUG
stu-miR398a-5p      GGGUUGAUUUGAGAACAUAUG
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