TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.

miRNA Family

miRNA
Species
Sequence
aly-miR408-3p
Arabidopsis lyrata
AUGCACUGCCUCUUCCCUGGC
aly-miR408-5p
Arabidopsis lyrata
CAGGGAACAAGCAGAGCAUGG
ath-miR408-3p
Arabidopsis thaliana
AUGCACUGCCUCUUCCCUGGC
ath-miR408-5p
Arabidopsis thaliana
ACAGGGAACAAGCAGAGCAUG
bdi-miR408-3p
Brachypodium distachyon
CUGCACUGCCUCUUCCCUGGC
bdi-miR408-5p
Brachypodium distachyon
CAGGGAUGGAGCAGAGCAUGG
bra-miR408
Brassica rapa
UGCACUGCCUCUUCCCUGGCU
cpa-miR408
Carica papaya
CUGCACUGCCUCUUCCCUGGC
cru-miR408
Capsella rubella
AUGCACUGCCUCUUCCCUGGC
csi-miR408-3p
Citrus sinensis
AUGCACUGCCUCUUCCCUGGC
csi-miR408-5p
Citrus sinensis
ACGGGGAACAGGCAGAGCAUG
esa-miR408
Eutrema salsugineum
AUGCACUGCCUCUUCCCUGGC
fve-miR408
Fragaria vesca
UGCACUGCCUCUUCCCUGGCU
gma-miR408a-3p
Glycine max
AUGCACUGCCUCUUCCCUGGC
gma-miR408a-5p
Glycine max
CAGGGGAACAGGCAGAGCAUG
gma-miR408b-3p
Glycine max
AUGCACUGCCUCUUCCCUGGC
gma-miR408c-3p
Glycine max
AUGCACUGCCUCUUCCCUGGC
gma-miR408c-5p
Glycine max
CAGGGGAACAGGCAGAGCAUG
gma-miR408d
Glycine max
UGCACUGCCUCUUCCCUGGC
lus-miR408a
Linum usitatissimum
AUGCACUGCCUCUUCCCUGGC
mac-miR408
Musa acuminata
UGCACUGCCUCUUCCCUGGCU
mdm-miR408a
Malus domestica
AUGCACUGCCUCUUCCCUGGC
mdm-miR408b
Malus domestica
ACAGGGAAGAGGUAGAGCAUG
mdm-miR408c
Malus domestica
ACAGGGAAGAGGUAGAGCAUG
mdm-miR408d
Malus domestica
ACAGGGAAGAGGUAGAGCAUG
mes-miR408
Manihot esculenta
AUGCACUGCCUCUUCCCUGGC
mpo-miR408-b3.0r1-15745
Marchantia polymorpha
UGCACUGCCUCUUCCCUGGCU
mtr-miR408-3p
Medicago truncatula
AUGCACUGCCUCUUCCCUGGC
mtr-miR408-5p
Medicago truncatula
ACAGGGAACAUGCAGAGCAUG
osa-miR408-3p
Oryza sativa
CUGCACUGCCUCUUCCCUGGC
osa-miR408-5p
Oryza sativa
CAGGGAUGAGGCAGAGCAUGG
pha-miR408
Panicum hallii
CUGCACUGCCUCUUCCCUGGC
ppt-miR408b
Physcomitrella patens
UGCACUGCCUCUUCCCUGGCU
ptc-miR408-3p
Populus trichocarpa
AUGCACUGCCUCUUCCCUGGC
ptc-miR408-5p
Populus trichocarpa
CGGGGAACAGGCAGAGCAUGG
pvi-miR408a
Panicum virgatum
UGCACUGCCUCUUCCCUGGCU
pvi-miR408b
Panicum virgatum
UGCACUGCCUCUUCCCUGGCU
pvi-miR408c
Panicum virgatum
UGCACUGCCUCUUCCCUGGCU
rco-miR408
Ricinus communis
CUGCACUGCCUCUUCCCUGGC
sbi-miR408
Sorghum bicolor
CUGCACUGCCUCUUCCCUGGC
sit-miR408
Setaria italica
CUGCACUGCCUCUUCCCUGGC
sly-miR408
Solanum lycopersicum
ACGGGGACGAGCCAGAGCAUG
smo-miR408
Selaginella moellendorffii
UGCACUGCCUCUUCCCUGGCUG
spo-miR408
Spirodela polyrhiza
UGCACUGCCUCUUCCCUGGCU
stu-miR408a-3p
Solanum tuberosum
UGCACAGCCUCUUCCCUGGUU
stu-miR408a-5p
Solanum tuberosum
ACAGGGACGAGGCAGCGCAUG
stu-miR408b-3p
Solanum tuberosum
UGCACUGCCUCUUCCCUGGCU
stu-miR408b-5p
Solanum tuberosum
ACGGGGACGAGACAGAGCAUG
tae-miR408
Triticum aestivum
CUGCACUGCCUCUUCCCUGGC
vvi-miR408
Vitis vinifera
AUGCACUGCCUCUUCCCUGGC
zma-miR408a
Zea mays
CUGCACUGCCUCUUCCCUGGC
zma-miR408b-3p
Zea mays
CUGCACUGCCUCUUCCCUGGC
zma-miR408b-5p
Zea mays
CAGGGACGAGGCAGAGCAUGG