TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

mtr-miR408-5p

Organism

Medicago truncatula

Species

Mature miRNA Sequence(5'-3')

ACAGGGAACAUGCAGAGCAUG

miRBase

Precursor miRNA Sequence(5'-3')

UAGUUAAUGACAGGACAAAGACAGGGAACAUGCAGAGCAUGGAUGAAACUAUCGACAGUGAAGGAAACUGUUGUGGCUCCACUCAUGCACUGCCUCUUCCCUGGCUUAUAAUCUGUUUUUAUUAU

miRBase

Precursor miRNA Structure(5'-3') 

UAGU   U      -ACA   A       CAU    A      A  AAA   U       GA 
    UAA GACAGG    AAG CAGGGAA   GCAG GCAUGG UG   CUA CGACAGU  A
    ||| ||||||    ||| |||||||   |||| |||||| ||   ||| |||||||  G
    AUU UUGUCU    UUC GUCCCUU   CGUC CGUACU AC   GGU GUUGUCA  A
UAUU   U      AAUA   G       CUC    A      C  CUC   -       AA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ath-miR408-5p       ACAGGGAACAAGCAGAGCAUG-
aly-miR408-5p       -CAGGGAACAAGCAGAGCAUGG
mtr-miR408-5p       ACAGGGAACAUGCAGAGCAUG-
mdm-miR408b         ACAGGGAAGAGGUAGAGCAUG-
mdm-miR408c         ACAGGGAAGAGGUAGAGCAUG-
mdm-miR408d         ACAGGGAAGAGGUAGAGCAUG-
gma-miR408a-5p      CAGGGGAACAGGCAGAGCAUG-
gma-miR408c-5p      CAGGGGAACAGGCAGAGCAUG-
ptc-miR408-5p       -CGGGGAACAGGCAGAGCAUGG
csi-miR408-5p       ACGGGGAACAGGCAGAGCAUG-
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