TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gma-miR408a-5p

Organism

Glycine max

Species

Mature miRNA Sequence(5'-3')

CAGGGGAACAGGCAGAGCAUG

miRBase

Precursor miRNA Sequence(5'-3')

GAGACAGGACAAAGCAGGGGAACAGGCAGAGCAUGGAUGGAGCUAUCAACACAAUAUUGUCAAGAAACUGAGAGUGAGAGGAGAAAUAUGUUGUGGUUCUGCUCAUGCACUGCCUCUUCCCUGGCUCUGUCUC

miRBase

Precursor miRNA Structure(5'-3') 

       GACAA   A      C      A      A        U     CAAUA  G  AAGAA     
GAGACAG     AGC GGGGAA AGGCAG GCAUGG UGGAGCUA CAACA     UU UC     ACUG 
|||||||     ||| |||||| |||||| |||||| |||||||| |||||     || ||     ||| A
CUCUGUC     UCG UCCCUU UCCGUC CGUACU GUCUUGGU GUUGU     AA AG     UGAG 
       -----   G      C      A      C        -     --AUA  G  GAGAG

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ath-miR408-5p       ACAGGGAACAAGCAGAGCAUG-
aly-miR408-5p       -CAGGGAACAAGCAGAGCAUGG
mtr-miR408-5p       ACAGGGAACAUGCAGAGCAUG-
mdm-miR408b         ACAGGGAAGAGGUAGAGCAUG-
mdm-miR408c         ACAGGGAAGAGGUAGAGCAUG-
mdm-miR408d         ACAGGGAAGAGGUAGAGCAUG-
gma-miR408a-5p      CAGGGGAACAGGCAGAGCAUG-
gma-miR408c-5p      CAGGGGAACAGGCAGAGCAUG-
ptc-miR408-5p       -CGGGGAACAGGCAGAGCAUGG
csi-miR408-5p       ACGGGGAACAGGCAGAGCAUG-
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