TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

stu-miR408a-5p

Organism

Solanum tuberosum

Species

Mature miRNA Sequence(5'-3')

ACAGGGACGAGGCAGCGCAUG

miRBase

Precursor miRNA Sequence(5'-3')

ACAGGGACGAGGCAGCGCAUGAGAUGUACAAUUUUACUAGUUGCCCAUUCCAUGCACAGCCUCUUCCCUGGUU

miRBase

Precursor miRNA Structure(5'-3') 

--A      C     A C     A    UA     U 
   CAGGGA GAGGC G GCAUG GAUG  CAAUU U
   |||||| ||||| | ||||| ||||  ||||| A
   GUCCCU CUCCG C CGUAC UUAC  GUUGA A
UUG      U     A A     C    CC     U

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

zma-miR408b-5p      -CAGGGACGAGGCAGAGCAUGG
stu-miR408a-5p      ACAGGGACGAGGCAGCGCAUG-
osa-miR408-5p       -CAGGGAUGAGGCAGAGCAUGG
bdi-miR408-5p       -CAGGGAUGGAGCAGAGCAUGG
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