TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

stu-miR408b-5p

Organism

Solanum tuberosum

Species

Mature miRNA Sequence(5'-3')

ACGGGGACGAGACAGAGCAUG

miRBase

Precursor miRNA Sequence(5'-3')

ACGGGGACGAGACAGAGCAUGAGAUGUGCAAUUUUUACUUGCCUAUUCCAUGCACUGCCUCUUCCCUGGCU

miRBase

Precursor miRNA Structure(5'-3') 

--A      C   A   A     A    U    UU 
   CGGGGA GAG CAG GCAUG GAUG GCAA  U
   |||||| ||| ||| ||||| |||| ||||  U
   GUCCCU CUC GUC CGUAC UUAU CGUU  C
UCG      U   C   A     C    C    CA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

stu-miR408b-5p      ACGGGGACGAGACAGAGCAUG
sly-miR408          ACGGGGACGAGCCAGAGCAUG
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