TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.

miRNA Family

miRNA
Species
Sequence
aly-miR394a-3p
Arabidopsis lyrata
AGGUGGGUAUACUGCCAAUA
aly-miR394a-5p
Arabidopsis lyrata
UUGGCAUUCUGUCCACCUCC
aly-miR394b-3p
Arabidopsis lyrata
AGGUGGACAUAUUGCCAACA
aly-miR394b-5p
Arabidopsis lyrata
UUGGCAUUCUGUCCACCUCC
ath-miR394a
Arabidopsis thaliana
UUGGCAUUCUGUCCACCUCC
ath-miR394b-3p
Arabidopsis thaliana
AGGUGGGCAUACUGCCAAUAG
ath-miR394b-5p
Arabidopsis thaliana
UUGGCAUUCUGUCCACCUCC
atr-miR394
Amborella trichopoda
UUGGCAUUCUGUCCACCUCC
bdi-miR394
Brachypodium distachyon
UUGGCAUUCUGUCCACCUCC
bra-miR394a
Brassica rapa
UUGGCAUUCUGUCCACCUCC
bra-miR394b
Brassica rapa
UUGGCAUUCUGUCCACCUCC
bra-miR394c
Brassica rapa
UUGGCAUUCUGUCCACCUCC
bra-miR394d
Brassica rapa
UUGGCAUUCUGUCCACCUCC
bra-miR394e
Brassica rapa
UUGGCAUUCUGUCCACCUCC
cpa-miR394a
Carica papaya
UUGGCAUUCUGUCCACCUCC
cpa-miR394b
Carica papaya
UUGGCAUUCUGUCCACCUCC
cru-miR394a
Capsella rubella
UUGGCAUUCUGUCCACCUCC
cru-miR394b
Capsella rubella
UUGGCAUUCUGUCCACCUCC
csi-miR394a
Citrus sinensis
UUGGCAUUCUGUCCACCUCC
csi-miR394b-5p
Citrus sinensis
UUGGCAUUCUGUCCACCUCC
dca-miR394-b2.0r1-12914
Daucus carota
UUUGGCAUUCUGUUCACCUCC
esa-miR394a
Eutrema salsugineum
UUGGCAUUCUGUCCACCUCC
esa-miR394b
Eutrema salsugineum
UUGGCAUUCUGUCCACCUCC
fve-miR394
Fragaria vesca
UUGGCAUUCUGUCCACCUCC
gma-miR394a-5p
Glycine max
UUGGCAUUCUGUCCACCUCC
gma-miR394b-3p
Glycine max
AGGUGGGCAUACUGUCAACU
gma-miR394b-5p
Glycine max
UUGGCAUUCUGUCCACCUCC
gma-miR394c-5p
Glycine max
UUGGCAUUCUGUCCACCUCC
gma-miR394d
Glycine max
UUGGCAUUCUGUCCACCUCC
gma-miR394e
Glycine max
UUGGCAUUCUGUCCACCUCC
gma-miR394f
Glycine max
UUGGCAUUCUGUCCACCUCC
gma-miR394g
Glycine max
UUGGCAUUCUGUCCACCUCC
lus-miR394a
Linum usitatissimum
UUGGCAUUCUGUCCACCUCC
lus-miR394b
Linum usitatissimum
UUGGCAUUCUGUCCACCUCC
mac-miR394a
Musa acuminata
UUGGCAUUCUGUCCACCUCC
mac-miR394b
Musa acuminata
UUGGCAUUCUGUCCACCUCC
mac-miR394c
Musa acuminata
UUGGCAUUCUGUCCACCUCC
mac-miR394d
Musa acuminata
UUGGCAUUCUGUCCACCUCC
mac-miR394e
Musa acuminata
UUGGCAUUCUGUCCACCUCC
mdm-miR394a
Malus domestica
UUGGCAUUCUGUCCACCUCC
mdm-miR394b
Malus domestica
UUGGCAUUCUGUCCACCUCC
mes-miR394a
Manihot esculenta
UUGGCAUUCUGUCCACCUCC
mes-miR394b
Manihot esculenta
UUGGCAUUCUGUCCACCUCC
mes-miR394c
Manihot esculenta
UUGGCAUUCUGUCCACCUCCAU
osa-miR394
Oryza sativa
UUGGCAUUCUGUCCACCUCC
pha-miR394
Panicum hallii
UUGGCAUUCUGUCCACCUCC
ppe-miR394a
Prunus persica
UUGGCAUUCUGUCCACCUCC
ppe-miR394b
Prunus persica
UUGGCAUUCUGUCCACCUCC
ptc-miR394a-5p
Populus trichocarpa
UUGGCAUUCUGUCCACCUCC
ptc-miR394b-5p
Populus trichocarpa
UUGGCAUUCUGUCCACCUCC
pvi-miR394a
Panicum virgatum
UUGGCAUUCUGUCCACCUCC
pvi-miR394b
Panicum virgatum
UUGGCAUUCUGUCCACCUCC
pvi-miR394c
Panicum virgatum
UUGGCAUUCUGUCCACCUCC
sbi-miR394a
Sorghum bicolor
UUGGCAUUCUGUCCACCUCC
sbi-miR394b
Sorghum bicolor
UUGGCAUUCUGUCCACCUCC
sit-miR394
Setaria italica
UUGGCAUUCUGUCCACCUCC
sly-miR394-3p
Solanum lycopersicum
AGGUGGGCAUACUGUCAACA
sly-miR394-5p
Solanum lycopersicum
UUGGCAUUCUGUCCACCUCC
spo-miR394
Spirodela polyrhiza
UUGGCAUUCUGUCCACCUCC
stu-miR384-5p
Solanum tuberosum
UUGGCAUUCUGUCCACCUCC
tcc-miR394a
Theobroma cacao
UUGGCAUUCUGUCCACCUCC
tcc-miR394b
Theobroma cacao
UUGGCAUUCUGUCCACCUCC
vvi-miR394a
Vitis vinifera
UUGGCAUUCUGUCCACCUCCAU
vvi-miR394b
Vitis vinifera
UUGGCAUUCUGUCCACCUCC
vvi-miR394c
Vitis vinifera
UUGGCAUUCUGUCCACCUCCAU
zma-miR394a-3p
Zea mays
AGGUGGGCAUACUGCCAAUG
zma-miR394a-5p
Zea mays
UUGGCAUUCUGUCCACCUCC
zma-miR394b-3p
Zea mays
AGGUGGGCAUACUGCCAAUG
zma-miR394b-5p
Zea mays
UUGGCAUUCUGUCCACCUCC