TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gma-miR394b-3p

Organism

Glycine max

Species

Mature miRNA Sequence(5'-3')

AGGUGGGCAUACUGUCAACU

miRBase

Precursor miRNA Sequence(5'-3')

UAACAGAGUUUAUUGGCAUUCUGUCCACCUCCACUUCCUACUCUCUCUCUGAGCCACAUGUUCGUGAAGUUGGAGGUGGGCAUACUGUCAACUGAGUUCUGUUG

miRBase

Precursor miRNA Structure(5'-3') 

            -      UUC            -    CUACUCUCUCUC     C 
UAACAGAGUUUA UUGGCA   UGUCCACCUCCA CUUC            UGAGC A
|||||||||||| ||||||   |||||||||||| ||||            ||||| C
GUUGUCUUGAGU AACUGU   ACGGGUGGAGGU GAAG            GCUUG G
            C      CAU            U    -----------U     U

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

sly-miR394-3p       AGGUGGGCAUACUGUCAACA-
gma-miR394b-3p      AGGUGGGCAUACUGUCAACU-
ath-miR394b-3p      AGGUGGGCAUACUGCCAAUAG
aly-miR394a-3p      AGGUGGGUAUACUGCCAAUA-
zma-miR394a-3p      AGGUGGGCAUACUGCCAAUG-
zma-miR394b-3p      AGGUGGGCAUACUGCCAAUG-
aly-miR394b-3p      AGGUGGACAUAUUGCCAACA-
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