TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

zma-miR394a-3p

Organism

Zea mays

Species

Mature miRNA Sequence(5'-3')

AGGUGGGCAUACUGCCAAUG

miRBase

Precursor miRNA Sequence(5'-3')

GGCGCUUACUGAAGAGUUCCUUGGCAUUCUGUCCACCUCCUCUCGCCGAUCUUGCAGAAAGUUUACCAGUUCUGUUGCAUUUUUUUUGGAGGUGGGCAUACUGCCAAUGGAGCUGUGUAGGCCUCC

miRBase

Precursor miRNA Structure(5'-3') 

--  C      UGA G      -      UUC           UCUCGCCGAUCUU      AGUU 
  GG GCUUAC   A AGUUCC UUGGCA   UGUCCACCUCC             GCAGAA    U
  || ||||||   | |||||| ||||||   |||||||||||             ||||||     
  UC CGGAUG   U UCGAGG AACCGU   ACGGGUGGAGG             UGUCUU    C
CC  -      --- G      U      CAU           -UUUUUUUUACGU      GACC

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

sly-miR394-3p       AGGUGGGCAUACUGUCAACA-
gma-miR394b-3p      AGGUGGGCAUACUGUCAACU-
ath-miR394b-3p      AGGUGGGCAUACUGCCAAUAG
aly-miR394a-3p      AGGUGGGUAUACUGCCAAUA-
zma-miR394a-3p      AGGUGGGCAUACUGCCAAUG-
zma-miR394b-3p      AGGUGGGCAUACUGCCAAUG-
aly-miR394b-3p      AGGUGGACAUAUUGCCAACA-
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