TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.

miRNA Family

miRNA
Species
Sequence
aly-miR393a-3p
Arabidopsis lyrata
AUCAUGCUAUCUCUUUGGAUU
aly-miR393a-5p
Arabidopsis lyrata
UCCAAAGGGAUCGCAUUGAUCC
aly-miR393b-3p
Arabidopsis lyrata
AUCAUGCGAUCUCUUUGGAUU
aly-miR393b-5p
Arabidopsis lyrata
UCCAAAGGGAUCGCAUUGAUCC
ath-miR393a-3p
Arabidopsis thaliana
AUCAUGCUAUCUCUUUGGAUU
ath-miR393a-5p
Arabidopsis thaliana
UCCAAAGGGAUCGCAUUGAUCC
ath-miR393b-3p
Arabidopsis thaliana
AUCAUGCGAUCUCUUUGGAUU
ath-miR393b-5p
Arabidopsis thaliana
UCCAAAGGGAUCGCAUUGAUCC
atr-miR393
Amborella trichopoda
UCCAAAGGGAUCGCAUUGAUCC
bdi-miR393a
Brachypodium distachyon
UCCAAAGGGAUCGCAUUGAUC
bdi-miR393b-3p
Brachypodium distachyon
UCAGUGCAAUCCCUUUGGAAU
bdi-miR393b-5p
Brachypodium distachyon
UCCAAAGGGAUCGCAUUGAUC
bol-miR393
Brassica oleracea
CCAAAGGGAUCGCAUUGAUCC
bra-miR393a
Brassica rapa
UCCAAAGGGAUCGCAUUGAUCC
bra-miR393b
Brassica rapa
UCCAAAGGGAUCGCAUUGAUCC
bra-miR393c
Brassica rapa
UCCAAAGGGAUCGCAUUGAUCC
bra-miR393d
Brassica rapa
UCCAAAGGGAUCGCAUUGAUC
bra-miR393e
Brassica rapa
UCCAAAGGGAUCGCAUUGAUC
cpa-miR393
Carica papaya
UCCAAAGGGAUCGCAUUGAUCC
cru-miR393a
Capsella rubella
UCCAAAGGGAUCGCAUUGAUCC
cru-miR393b
Capsella rubella
UCCAAAGGGAUCGCAUUGAUCC
csi-miR393a
Citrus sinensis
AUCCAAAGGGAUCGCAUUGAUC
csi-miR393b-3p
Citrus sinensis
UCAUGCGAUCCCUUCGGAAUU
csi-miR393b-5p
Citrus sinensis
UUCCAAAGGGAUCGCAUUGAUC
csi-miR393c-3p
Citrus sinensis
AUCAUGCUAUCCCUUUGGAUU
csi-miR393c-5p
Citrus sinensis
UCCAAAGGGAUCGCAUUGAUC
esa-miR393a
Eutrema salsugineum
UCCAAAGGGAUCGCAUUGAUCC
esa-miR393b
Eutrema salsugineum
UCCAAAGGGAUCGCAUUGAUCC
fve-miR393a
Fragaria vesca
UCCAAAGGGAUCGCAUUGAUC
fve-miR393b
Fragaria vesca
UCCAAAGGGAUCGCAUUGAUCU
gma-miR393a
Glycine max
UCCAAAGGGAUCGCAUUGAUC
gma-miR393b
Glycine max
UUUGGGAUCAUGCUAUCCCUU
gma-miR393c-3p
Glycine max
AUCAUGCUAUCCCUUUGGAUU
gma-miR393c-5p
Glycine max
UCCAAAGGGAUCGCAUUGAUCC
gma-miR393d
Glycine max
UCCAAAGGGAUCGCAUUGAUCC
gma-miR393e
Glycine max
UCCAAAGGGAUCGCAUUGAUCC
gma-miR393f
Glycine max
UCCAAAGGGAUCGCAUUGAUCC
gma-miR393g
Glycine max
UCCAAAGGGAUCGCAUUGAUCC
gma-miR393h
Glycine max
UUCCAAAGGGAUCGCAUUGAUC
gma-miR393i
Glycine max
UUCCAAAGGGAUCGCAUUGAUC
gma-miR393j
Glycine max
UUCCAAAGGGAUCGCAUUGAUC
gma-miR393k
Glycine max
UUCCAAAGGGAUCGCAUUGAUC
lus-miR393a
Linum usitatissimum
UCCAAAGGGAUCGCAUUGAUC
lus-miR393b
Linum usitatissimum
UCCAAAGGGAUCGCAUUGAUC
lus-miR393c
Linum usitatissimum
UCCAAAGGGAUCGCAUUGAUC
lus-miR393d
Linum usitatissimum
UCCAAAGGGAUCGCAUUGAUC
mac-miR393a
Musa acuminata
UCCAAAGGGAUCGCAUUGAUCU
mac-miR393b
Musa acuminata
UCCAAAGGGAUCGCAUUGAUCU
mac-miR393c
Musa acuminata
UCCAAAGGGAUCGCAUUGAUCU
mac-miR393d
Musa acuminata
UCCAAAGGGAUCGCAUUGAUCU
mac-miR393e
Musa acuminata
UCCAAAGGGAUCGCAUUGAUC
mac-miR393f
Musa acuminata
UCCAAAGGGAUCGCAUUGAUC
mdm-miR393a
Malus domestica
UCCAAAGGGAUCGCAUUGAUCU
mdm-miR393b
Malus domestica
UCCAAAGGGAUCGCAUUGAUCU
mdm-miR393c
Malus domestica
UCCAAAGGGAUCGCAUUGAUCU
mdm-miR393d
Malus domestica
AUCAUGCGAUCCCUUCGGACG
mdm-miR393e
Malus domestica
AUCAUGCGAUCCCUUCGGACG
mdm-miR393f
Malus domestica
AUCAUGCGAUCCCUUCGGACG
mdm-miR393g
Malus domestica
AUCAUGCUAUCCCUUUGGAUU
mdm-miR393h
Malus domestica
AUCAUGCUAUCCCUUUGGAUU
mes-miR393a
Manihot esculenta
UCCAAAGGGAUCGCAUUGAUC
mes-miR393b
Manihot esculenta
UCCAAAGGGAUCGCAUUGAUCC
mes-miR393c
Manihot esculenta
UCCAAAGGGAUCGCAUUGAUCU
mes-miR393d
Manihot esculenta
UCCAAAGGGAUCGCAUUGAUCU
mtr-miR393a
Medicago truncatula
UCCAAAGGGAUCGCAUUGAUC
mtr-miR393b-3p
Medicago truncatula
UUUGGGAUCAUGCUAUCCCUU
mtr-miR393b-5p
Medicago truncatula
UCCAAAGGGAUCGCAUUGAUC
osa-miR393a
Oryza sativa
UCCAAAGGGAUCGCAUUGAUC
osa-miR393b-3p
Oryza sativa
UCAGUGCAAUCCCUUUGGAAU
osa-miR393b-5p
Oryza sativa
UCCAAAGGGAUCGCAUUGAUCU
pha-miR393a
Panicum hallii
UCCAAAGGGAUCGCAUUGAUC
pha-miR393b
Panicum hallii
UCCAAAGGGAUCGCAUUGAUC
ppe-miR393a
Prunus persica
CAUCCAAAGGGAUCGCAUUGA
ppe-miR393b
Prunus persica
UCCAAAGGGAUCGCAUUGAUC
ptc-miR393a-3p
Populus trichocarpa
AUCAUGCUAUCCCUUUGGAUU
ptc-miR393a-5p
Populus trichocarpa
UCCAAAGGGAUCGCAUUGAUC
ptc-miR393b-3p
Populus trichocarpa
AUCAUGCUAUCCCUUUGGAUU
ptc-miR393b-5p
Populus trichocarpa
UCCAAAGGGAUCGCAUUGAUC
ptc-miR393c
Populus trichocarpa
UCCAAAGGGAUCGCAUUGAUC
pvi-miR393a
Panicum virgatum
UCCAAAGGGAUCGCAUUGAU
pvi-miR393b
Panicum virgatum
UCCAAAGGGAUCGCAUUGAU
pvi-miR393c
Panicum virgatum
CUCCAAAGGGAUCGCAUUGA
pvi-miR393d
Panicum virgatum
CUCCAAAGGGAUCGCAUUGA
rco-miR393
Ricinus communis
UCCAAAGGGAUCGCAUUGAUC
sbi-miR393a
Sorghum bicolor
UCCAAAGGGAUCGCAUUGAUC
sbi-miR393b
Sorghum bicolor
UCCAAAGGGAUCGCAUUGAUC
sit-miR393a
Setaria italica
CUCCAAAGGGAUCGCAUUGAU
sit-miR393b
Setaria italica
UCCAAAGGGAUCGCAUUGAUC
sly-miR393
Solanum lycopersicum
AUCAUGCGAUCUCUUCGGAAU
stu-miR393-3p
Solanum tuberosum
AUCAUGCGAUCUCUUCGGAAU
stu-miR393-5p
Solanum tuberosum
UCCAAAGGGAUCGCAUUGAUCC
tcc-miR393a
Theobroma cacao
UCCAAAGGGAUCGCAUUGAUCC
tcc-miR393b
Theobroma cacao
UCCAAAGGGAUCGCAUUGAUC
vvi-miR393a
Vitis vinifera
UCCAAAGGGAUCGCAUUGAUC
vvi-miR393b
Vitis vinifera
UCCAAAGGGAUCGCAUUGAUC
zma-miR393a-3p
Zea mays
AUCAGUGCAAUCCCUUUGGAAU
zma-miR393a-5p
Zea mays
UCCAAAGGGAUCGCAUUGAUCU
zma-miR393b-3p
Zea mays
AUCAAUGCGAUCCUUUUGGAGG
zma-miR393b-5p
Zea mays
UCCAAAGGGAUCGCAUUGAUCC
zma-miR393c-3p
Zea mays
GUCAGUGCAAUCCCUUUGGAAU
zma-miR393c-5p
Zea mays
UCCAAAGGGAUCGCAUUGAUCU
zos-miR393a
Zostera marina
UUCCAAAGGGAUCGCAUUGUUC
zos-miR393b
Zostera marina
UUCCAAAGGGAUCGCAUUGAU