TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gma-miR393b

Organism

Glycine max

Species

Mature miRNA Sequence(5'-3')

UUUGGGAUCAUGCUAUCCCUU

miRBase

Precursor miRNA Sequence(5'-3')

AGAGGAGGCAUCCAAAGGGAUCACAUUGAUCCCAAAUCCAAGCUUCAAUGUUCUUCUCUCUUUCUCACUCAAAAUAUUAAUUUUAUUUGGGAUCAUGCUAUCCCUUUGGACUUCUC

miRBase

Precursor miRNA Structure(5'-3') 

A      GCA           CA   U          CC   C  C      CUUCUCUCU 
 GAGGAG   UCCAAAGGGAU  CAU GAUCCCAAAU  AAG UU AAUGUU         U
 ||||||   |||||||||||  ||| ||||||||||  ||| || ||||||          
 CUCUUC   AGGUUUCCCUA  GUA CUAGGGUUUA  UUU AA UUAUAA         U
-      ---           UC   -          --   U  -      AACUCACUC

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

mtr-miR393b-3p      UUUGGGAUCAUGCUAUCCCUU
gma-miR393b         UUUGGGAUCAUGCUAUCCCUU
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