TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

mtr-miR393b-3p

Organism

Medicago truncatula

Species

Mature miRNA Sequence(5'-3')

UUUGGGAUCAUGCUAUCCCUU

miRBase

Precursor miRNA Sequence(5'-3')

AGGCAUCCAAAGGGAUCGCAUUGAUCCCAAAUCUAAUUAAGUCCCUAGCUACUUAAUUAACAACUUAAUUUCCUUAAUAUCUCAUAAUAUUUGGGAUCAUGCUAUCCCUUUGGAUUCAU

miRBase

Precursor miRNA Structure(5'-3') 

-A  C            C    U          ----------------------------C         CCC 
  GG AUCCAAAGGGAU GCAU GAUCCCAAAU                             UAAUUAAGU   U
  || |||||||||||| |||| ||||||||||                             |||||||||    
  CU UAGGUUUCCCUA CGUA CUAGGGUUUA                             AUUAAUUCA   C
UA  -            U    -          UAAUACUCUAUAAUUCCUUUAAUUCAACA         UCG

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

mtr-miR393b-3p      UUUGGGAUCAUGCUAUCCCUU
gma-miR393b         UUUGGGAUCAUGCUAUCCCUU
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