TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.

miRNA Family

miRNA
Species
Sequence
aly-miR156h-5p
Arabidopsis lyrata
UGACAGAAGAAAGAGAGCAC
aly-miR157a-3p
Arabidopsis lyrata
GCUCUCUAGCCUUCUGUCAUCA
aly-miR157a-5p
Arabidopsis lyrata
UUGACAGAAGAUAGAGAGCAC
aly-miR157b-3p
Arabidopsis lyrata
GCUCUCUAAGCUUCUGUCAUCA
aly-miR157b-5p
Arabidopsis lyrata
UUGACAGAAGAUAGAGAGCAC
aly-miR157c-3p
Arabidopsis lyrata
GCUCUCUAUACUUCUGUCACC
aly-miR157c-5p
Arabidopsis lyrata
UUGACAGAAGAUAGAGAGCAC
aly-miR157d-3p
Arabidopsis lyrata
GCUCUCUAUGCUUCUGUCAUC
aly-miR157d-5p
Arabidopsis lyrata
UGACAGAAGAUAGAGAGCAC
ath-miR156h
Arabidopsis thaliana
UGACAGAAGAAAGAGAGCAC
ath-miR157a-3p
Arabidopsis thaliana
GCUCUCUAGCCUUCUGUCAUC
ath-miR157a-5p
Arabidopsis thaliana
UUGACAGAAGAUAGAGAGCAC
ath-miR157b-3p
Arabidopsis thaliana
GCUCUCUAGCCUUCUGUCAUC
ath-miR157b-5p
Arabidopsis thaliana
UUGACAGAAGAUAGAGAGCAC
ath-miR157c-3p
Arabidopsis thaliana
GCUCUCUAUACUUCUGUCACC
ath-miR157c-5p
Arabidopsis thaliana
UUGACAGAAGAUAGAGAGCAC
ath-miR157d
Arabidopsis thaliana
UGACAGAAGAUAGAGAGCAC
atr-miR156a
Amborella trichopoda
UUGACAGAAGAUAGAGAGCAC
atr-miR156c
Amborella trichopoda
UUGACAGAAGAUAGAGAGCAC
bol-miR157
Brassica oleracea
UUGACAGAAGAUAGAGAGCACU
bra-miR156d
Brassica rapa
UUGACAGAAGAAAGAGAGCAC
bra-miR156g
Brassica rapa
UUGACAGAAGAAAGAGAGCAC
bra-miR156i
Brassica rapa
UUGACAGAAGAGAGCGAGCAC
bra-miR157a
Brassica rapa
UUGACAGAAGAUAGAGAGCAC
bra-miR157b
Brassica rapa
UUGACAGAAGAUAGAGAGCAC
bra-miR157c
Brassica rapa
UUGACAGAAGAUAGAGAGCAC
bra-miR157d
Brassica rapa
UUGACAGAAGAUAGAGAGCAC
cpa-miR156e
Carica papaya
UUGACAGAAGAUAGAGAGCAC
cpa-miR156f
Carica papaya
UUGACAGAAGAUAGAGAGCAC
cru-miR157a
Capsella rubella
UUGACAGAAGAUAGAGAGCAC
cru-miR157b
Capsella rubella
UUGACAGAAGAUAGAGAGCAC
cru-miR157c
Capsella rubella
UGACAGAAGAUAGAGAGCACA
cru-miR157d
Capsella rubella
UGACAGAAGAUAGAGAGCACA
csi-miR156d-5p
Citrus sinensis
UGACAGAAGAUAGAGAGCGC
csi-miR156e-3p
Citrus sinensis
GCUCUCUGUGCUUCUGUCAUCA
csi-miR156e-5p
Citrus sinensis
GUGACAGAAGAUAGAGAGCGC
csi-miR156g-3p
Citrus sinensis
GCUCUCUAUUCUUCUGUCAUC
csi-miR156g-5p
Citrus sinensis
UUGACGGAAGAUAGAGAGCAC
csi-miR156i-5p
Citrus sinensis
UUGACAGAAGAUAGAUAGCAC
dca-miR156-b2.0r1-17334
Daucus carota
GCUCUCUAUGCUUCUGUCAUC
esa-miR156a
Eutrema salsugineum
UUGACAGAAGAAAGAGAGCAC
esa-miR157a
Eutrema salsugineum
UUGACAGAAGAUAGAGAGCAC
esa-miR157b
Eutrema salsugineum
UUGACAGAAGAUAGAGAGCAC
esa-miR157c
Eutrema salsugineum
UUGACAGAAGAUAGAGAGCAC
esa-miR157d
Eutrema salsugineum
UUGACAGAAGAUAGAGAGCAC
fve-miR156f
Fragaria vesca
UUGACAGAAGAUAGAGAGCAC
fve-miR156g-3p
Fragaria vesca
GCUCUCUAUGCUUCUGUCAUC
fve-miR156g-5p
Fragaria vesca
UUGACAGAAGAUAGAGAGCAC
fve-miR156i
Fragaria vesca
UGACAGAAGAUAGAGAGCAC
gma-miR156c
Glycine max
UUGACAGAAGAUAGAGAGCAC
gma-miR156d
Glycine max
UUGACAGAAGAUAGAGAGCAC
gma-miR156e
Glycine max
CUGACAGAAGAUAGAGAGCAC
gma-miR156g
Glycine max
ACAGAAGAUAGAGAGCACAG
gma-miR156i
Glycine max
UUGACAGAAGAUAGAGAGCAC
gma-miR156j
Glycine max
UUGACAGAAGAUAGAGAGCAC
gma-miR156l
Glycine max
UUGACAGAAGAUAGAGAGCAC
gma-miR156m
Glycine max
UUGACAGAAGAUAGAGAGCAC
gma-miR156p
Glycine max
UUGACAGAAGAAAGGGAGCAC
gma-miR156r
Glycine max
CUGACAGAAGAUAGAGAGCAU
gma-miR156t
Glycine max
UUGACAGAAGAAAGGGAGCAC
gra-miR157a
Gossypium raimondii
UUGACAGAAGAUAGAGAGCAC
gra-miR157b
Gossypium raimondii
UUGACAGAAGAUAGAGAGCAC
lus-miR156b
Linum usitatissimum
UUGACAGAAGAUAGAGAGCAC
lus-miR156c
Linum usitatissimum
UUGACAGAAGAUAGAGAGCAC
lus-miR156d
Linum usitatissimum
UGACAGAAGAAAGAGAGCAC
lus-miR156e
Linum usitatissimum
UUGACAGAAGAUAGAGAGCAC
lus-miR156f
Linum usitatissimum
UUGACAGAAGAUAGAGAGCAC
lus-miR156h
Linum usitatissimum
UUGACAGAAGAUAGAGAGCAC
lus-miR156i
Linum usitatissimum
UUGACAGAAGAUAGAGAGCAC
mac-miR156f
Musa acuminata
UUGACAGAAGAGAGUGAGCACU
mac-miR156s
Musa acuminata
UUGACAGAAGAGAGCGAGCAC
mac-miR156w
Musa acuminata
UUGACAGAAGAGAGCGAGCAC
mac-miR157a
Musa acuminata
UUGACAGAAGAUAGAGAGCAC
mac-miR157b
Musa acuminata
UUGACAGAAGAUAGAGAGCAC
mac-miR157c
Musa acuminata
UUGACAGAAGAUAGAGAGCAC
mac-miR157d
Musa acuminata
UUGACAGAAGAUAGAGAGCAC
mac-miR157e
Musa acuminata
UUGACAGAAGAUAGAGAGCAC
mdm-miR156aa
Malus domestica
UGACAGAAGAUAGAGAGCAC
mdm-miR156ab
Malus domestica
UUGACAGAAGAUAGAGAGCAC
mdm-miR156ac
Malus domestica
UUGACAGAAGAUAGAGAGCAC
mdm-miR156p
Malus domestica
CUGACAGAAGAUAGAGAGCAC
mdm-miR156q
Malus domestica
CUGACAGAAGAUAGAGAGCAC
mdm-miR156r
Malus domestica
CUGACAGAAGAUAGAGAGCAC
mdm-miR156s
Malus domestica
CUGACAGAAGAUAGAGAGCAC
mdm-miR156x
Malus domestica
UGACAGAAGAUAGAGAGCAC
mdm-miR156y
Malus domestica
UGACAGAAGAUAGAGAGCAC
mdm-miR156z
Malus domestica
UGACAGAAGAUAGAGAGCAC
mes-miR156h
Manihot esculenta
UUGACAGAAGAUAGAGAGCAC
mes-miR156i
Manihot esculenta
UUGACAGAAGAUAGAGAGCAC
mes-miR156j
Manihot esculenta
UUGACAGAAGAUAGAGAGCAC
mes-miR535c
Manihot esculenta
UUGACGACGAGAGAGAGCACA
mtr-miR156e
Medicago truncatula
UUGACAGAAGAUAGAGAGCAC
mtr-miR156f
Medicago truncatula
UUGACAGAAGAUAGAGAGCAC
mtr-miR156g-3p
Medicago truncatula
GCUCUCUAGACUUCUGUCAUC
mtr-miR156g-5p
Medicago truncatula
UUGACAGAAGAUAGAGGGCAC
mtr-miR156h-3p
Medicago truncatula
GCUCUUUAUUCUUCUGUCAUC
mtr-miR156h-5p
Medicago truncatula
UUGACAGAAGAUAGAGAGCAC
ppe-miR156a
Prunus persica
UGACAGAAGAAAGAGAGCAC
ppe-miR156b
Prunus persica
UGACAGAAGAAAGAGAGCAC
ppe-miR156f
Prunus persica
UGACAGAAGAUAGAGAGCAC
ppe-miR156g
Prunus persica
UUGACAGAAGAUAGAGAGCAC
ppe-miR156h
Prunus persica
UUGACAGAAGAUAGAGAGCAC
ppe-miR156i
Prunus persica
UUGACAGAAGAUAGAGAGCAC
ptc-miR156g
Populus trichocarpa
UUGACAGAAGAUAGAGAGCAC
ptc-miR156h
Populus trichocarpa
UUGACAGAAGAUAGAGAGCAC
ptc-miR156i
Populus trichocarpa
UUGACAGAAGAUAGAGAGCAC
ptc-miR156j
Populus trichocarpa
UUGACAGAAGAUAGAGAGCAC
ptc-miR156l
Populus trichocarpa
UUGACAGAAGAUGGAGAGCAC
pvi-miR156t
Panicum virgatum
UUGACAGAAGAGAGCGAGCAC
pvi-miR156u
Panicum virgatum
UUGACAGAAGAGAGCGAGCAC
rco-miR156f
Ricinus communis
UUGACAGAAGAUAGAGAGCAC
rco-miR156g
Ricinus communis
UUGACAGAAGAUAGAGAGCAC
rco-miR156h
Ricinus communis
UUGACAGAAGAUAGAGAGCAC
sit-miR156a
Setaria italica
UUGACAGAAGAGAGCGAGCAC
sly-miR156a
Solanum lycopersicum
UUGACAGAAGAUAGAGAGCAC
sly-miR156b
Solanum lycopersicum
UUGACAGAAGAUAGAGAGCAC
sly-miR156c
Solanum lycopersicum
UUGACAGAAGAUAGAGAGCAC
smo-miR156b
Selaginella moellendorffii
CUGACAGAAGAUAGAGAGCAC
smo-miR156c
Selaginella moellendorffii
UUGACAGAAGAAAGAGAGCAC
smo-miR156d
Selaginella moellendorffii
UUGACAGAAGACAGGGAGCAC
spo-miR157a
Spirodela polyrhiza
UUGACAGAAGAUAGAGAGCAC
spo-miR157b
Spirodela polyrhiza
UUGACAGAAGAUAGAGAGCAC
spo-miR157c
Spirodela polyrhiza
UUGACAGAAGAUAGAGAGCAC
stu-miR156a
Solanum tuberosum
UUGACAGAAGAUAGAGAGCAC
stu-miR156b
Solanum tuberosum
UUGACAGAAGAUAGAGAGCAC
stu-miR156c
Solanum tuberosum
UUGACAGAAGAUAGAGAGCAC
stu-miR156d-3p
Solanum tuberosum
GCUCUCUAUGCUUCUGUCAUCA
stu-miR156d-5p
Solanum tuberosum
UUGACAGAAGAUAGAGAGCAC
tcc-miR156e
Theobroma cacao
UUGACAGAAGAUAGAGAGCAC
tcc-miR156f
Theobroma cacao
UUGACAGAAGAUAGAGAGCAC
vvi-miR156f
Vitis vinifera
UUGACAGAAGAUAGAGAGCAC
vvi-miR156g
Vitis vinifera
UUGACAGAAGAUAGAGAGCAC
vvi-miR156i
Vitis vinifera
UUGACAGAAGAUAGAGAGCAC
zos-miR156a
Zostera marina
UGACAGAAGAGAGAGCGCACU
zos-miR157
Zostera marina
UGACAGAAGAUAGUGAGCACA