TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

mtr-miR156g-3p

Organism

Medicago truncatula

Species

Mature miRNA Sequence(5'-3')

GCUCUCUAGACUUCUGUCAUC

miRBase

Precursor miRNA Sequence(5'-3')

GGUUGUUGACAGAAGAUAGAGGGCACUAAGGAUGAUAUGCAUACACAUAUAUAUACAACAUGGAGGAGGAGCUUAAUUGCAUUUCAUUUCCUUUGUGCUCUCUAGACUUCUGUCAUCACC

miRBase

Precursor miRNA Structure(5'-3') 

   U U         -A          U     --   U     UACACAUAUAUAUACAACAUG   GA 
GGU G UGACAGAAG  UAGAGGGCAC AAGGA  UGA AUGCA                     GAG  G
||| | |||||||||  |||||||||| |||||  ||| |||||                     |||   
CCA C ACUGUCUUC  AUCUCUCGUG UUCCU  ACU UACGU                     UUC  G
   - U         AG          U     UU   U     ------------------UAA   GA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ath-miR157a-3p               GCUCUCUAGCCUUCUGUCAUC-
ath-miR157b-3p               GCUCUCUAGCCUUCUGUCAUC-
aly-miR157a-3p               GCUCUCUAGCCUUCUGUCAUCA
mtr-miR156g-3p               GCUCUCUAGACUUCUGUCAUC-
aly-miR157d-3p               GCUCUCUAUGCUUCUGUCAUC-
fve-miR156g-3p               GCUCUCUAUGCUUCUGUCAUC-
dca-miR156-b2.0r1-17334      GCUCUCUAUGCUUCUGUCAUC-
stu-miR156d-3p               GCUCUCUAUGCUUCUGUCAUCA
csi-miR156e-3p               GCUCUCUGUGCUUCUGUCAUCA
aly-miR157b-3p               GCUCUCUAAGCUUCUGUCAUCA
csi-miR156g-3p               GCUCUCUAUUCUUCUGUCAUC-
mtr-miR156h-3p               GCUCUUUAUUCUUCUGUCAUC-
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