TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



mtr-miR156g-5p
Medicago truncatula

Species
GGUUGUUGACAGAAGAUAGAGGGCACUAAGGAUGAUAUGCAUACACAUAUAUAUACAACAUGGAGGAGGAGCUUAAUUGCAUUUCAUUUCCUUUGUGCUCUCUAGACUUCUGUCAUCACC

miRBase
   U U         -A          U     --   U     UACACAUAUAUAUACAACAUG   GA 
GGU G UGACAGAAG  UAGAGGGCAC AAGGA  UGA AUGCA                     GAG  G
||| | |||||||||  |||||||||| |||||  ||| |||||                     |||   
CCA C ACUGUCUUC  AUCUCUCGUG UUCCU  ACU UACGU                     UUC  G
   - U         AG          U     UU   U     ------------------UAA   GA 

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

bra-miR156i         --UUGACAGAAGAGAGCGAGCAC--
mac-miR156s         --UUGACAGAAGAGAGCGAGCAC--
mac-miR156w         --UUGACAGAAGAGAGCGAGCAC--
pvi-miR156t         --UUGACAGAAGAGAGCGAGCAC--
pvi-miR156u         --UUGACAGAAGAGAGCGAGCAC--
sit-miR156a         --UUGACAGAAGAGAGCGAGCAC--
mac-miR156f         --UUGACAGAAGAGAGUGAGCACU-
bra-miR156d         --UUGACAGAAGAAAGAGAGCAC--
bra-miR156g         --UUGACAGAAGAAAGAGAGCAC--
esa-miR156a         --UUGACAGAAGAAAGAGAGCAC--
smo-miR156c         --UUGACAGAAGAAAGAGAGCAC--
ath-miR156h         ---UGACAGAAGAAAGAGAGCAC--
aly-miR156h-5p      ---UGACAGAAGAAAGAGAGCAC--
lus-miR156d         ---UGACAGAAGAAAGAGAGCAC--
ppe-miR156a         ---UGACAGAAGAAAGAGAGCAC--
ppe-miR156b         ---UGACAGAAGAAAGAGAGCAC--
gma-miR156p         --UUGACAGAAGAAAGGGAGCAC--
gma-miR156t         --UUGACAGAAGAAAGGGAGCAC--
smo-miR156d         --UUGACAGAAGACAGGGAGCAC--
gma-miR156e         --CUGACAGAAGAUAGAGAGCAC--
gma-miR156r         --CUGACAGAAGAUAGAGAGCAU--
smo-miR156b         --CUGACAGAAGAUAGAGAGCAC--
mdm-miR156p         --CUGACAGAAGAUAGAGAGCAC--
mdm-miR156q         --CUGACAGAAGAUAGAGAGCAC--
mdm-miR156r         --CUGACAGAAGAUAGAGAGCAC--
mdm-miR156s         --CUGACAGAAGAUAGAGAGCAC--
ath-miR157d         ---UGACAGAAGAUAGAGAGCAC--
cru-miR157c         ---UGACAGAAGAUAGAGAGCACA-
gma-miR156g         -----ACAGAAGAUAGAGAGCACAG
cru-miR157d         ---UGACAGAAGAUAGAGAGCACA-
zos-miR157          ---UGACAGAAGAUAGUGAGCACA-
csi-miR156d-5p      ---UGACAGAAGAUAGAGAGCGC--
csi-miR156e-5p      --GUGACAGAAGAUAGAGAGCGC--
aly-miR157d-5p      ---UGACAGAAGAUAGAGAGCAC--
mdm-miR156x         ---UGACAGAAGAUAGAGAGCAC--
mdm-miR156y         ---UGACAGAAGAUAGAGAGCAC--
mdm-miR156z         ---UGACAGAAGAUAGAGAGCAC--
mdm-miR156aa        ---UGACAGAAGAUAGAGAGCAC--
ppe-miR156f         ---UGACAGAAGAUAGAGAGCAC--
fve-miR156i         ---UGACAGAAGAUAGAGAGCAC--
mac-miR157c         --UUGACAGAAGAUAGAGAGCAC--
mac-miR157d         --UUGACAGAAGAUAGAGAGCAC--
spo-miR157c         --UUGACAGAAGAUAGAGAGCAC--
ath-miR157a-5p      --UUGACAGAAGAUAGAGAGCAC--
ath-miR157b-5p      --UUGACAGAAGAUAGAGAGCAC--
ath-miR157c-5p      --UUGACAGAAGAUAGAGAGCAC--
mtr-miR156e         --UUGACAGAAGAUAGAGAGCAC--
mtr-miR156f         --UUGACAGAAGAUAGAGAGCAC--
gra-miR157b         --UUGACAGAAGAUAGAGAGCAC--
vvi-miR156f         --UUGACAGAAGAUAGAGAGCAC--
vvi-miR156g         --UUGACAGAAGAUAGAGAGCAC--
vvi-miR156i         --UUGACAGAAGAUAGAGAGCAC--
sly-miR156a         --UUGACAGAAGAUAGAGAGCAC--
sly-miR156b         --UUGACAGAAGAUAGAGAGCAC--
sly-miR156c         --UUGACAGAAGAUAGAGAGCAC--
gma-miR156l         --UUGACAGAAGAUAGAGAGCAC--
lus-miR156f         --UUGACAGAAGAUAGAGAGCAC--
mes-miR156h         --UUGACAGAAGAUAGAGAGCAC--
stu-miR156d-5p      --UUGACAGAAGAUAGAGAGCAC--
cpa-miR156e         --UUGACAGAAGAUAGAGAGCAC--
atr-miR156a         --UUGACAGAAGAUAGAGAGCAC--
atr-miR156c         --UUGACAGAAGAUAGAGAGCAC--
fve-miR156g-5p      --UUGACAGAAGAUAGAGAGCAC--
fve-miR156f         --UUGACAGAAGAUAGAGAGCAC--
lus-miR156h         --UUGACAGAAGAUAGAGAGCAC--
cpa-miR156f         --UUGACAGAAGAUAGAGAGCAC--
ppe-miR156i         --UUGACAGAAGAUAGAGAGCAC--
ppe-miR156h         --UUGACAGAAGAUAGAGAGCAC--
ppe-miR156g         --UUGACAGAAGAUAGAGAGCAC--
stu-miR156c         --UUGACAGAAGAUAGAGAGCAC--
stu-miR156b         --UUGACAGAAGAUAGAGAGCAC--
stu-miR156a         --UUGACAGAAGAUAGAGAGCAC--
mes-miR156j         --UUGACAGAAGAUAGAGAGCAC--
mes-miR156i         --UUGACAGAAGAUAGAGAGCAC--
mdm-miR156ac        --UUGACAGAAGAUAGAGAGCAC--
mdm-miR156ab        --UUGACAGAAGAUAGAGAGCAC--
lus-miR156e         --UUGACAGAAGAUAGAGAGCAC--
lus-miR156c         --UUGACAGAAGAUAGAGAGCAC--
lus-miR156i         --UUGACAGAAGAUAGAGAGCAC--
lus-miR156b         --UUGACAGAAGAUAGAGAGCAC--
gma-miR156m         --UUGACAGAAGAUAGAGAGCAC--
gma-miR156j         --UUGACAGAAGAUAGAGAGCAC--
gma-miR156i         --UUGACAGAAGAUAGAGAGCAC--
tcc-miR156f         --UUGACAGAAGAUAGAGAGCAC--
tcc-miR156e         --UUGACAGAAGAUAGAGAGCAC--
aly-miR157c-5p      --UUGACAGAAGAUAGAGAGCAC--
aly-miR157b-5p      --UUGACAGAAGAUAGAGAGCAC--
aly-miR157a-5p      --UUGACAGAAGAUAGAGAGCAC--
rco-miR156h         --UUGACAGAAGAUAGAGAGCAC--
rco-miR156g         --UUGACAGAAGAUAGAGAGCAC--
rco-miR156f         --UUGACAGAAGAUAGAGAGCAC--
gra-miR157a         --UUGACAGAAGAUAGAGAGCAC--
mtr-miR156h-5p      --UUGACAGAAGAUAGAGAGCAC--
ptc-miR156j         --UUGACAGAAGAUAGAGAGCAC--
ptc-miR156i         --UUGACAGAAGAUAGAGAGCAC--
ptc-miR156h         --UUGACAGAAGAUAGAGAGCAC--
ptc-miR156g         --UUGACAGAAGAUAGAGAGCAC--
gma-miR156c         --UUGACAGAAGAUAGAGAGCAC--
gma-miR156d         --UUGACAGAAGAUAGAGAGCAC--
spo-miR157b         --UUGACAGAAGAUAGAGAGCAC--
spo-miR157a         --UUGACAGAAGAUAGAGAGCAC--
mac-miR157e         --UUGACAGAAGAUAGAGAGCAC--
mac-miR157b         --UUGACAGAAGAUAGAGAGCAC--
mac-miR157a         --UUGACAGAAGAUAGAGAGCAC--
esa-miR157d         --UUGACAGAAGAUAGAGAGCAC--
esa-miR157c         --UUGACAGAAGAUAGAGAGCAC--
esa-miR157b         --UUGACAGAAGAUAGAGAGCAC--
esa-miR157a         --UUGACAGAAGAUAGAGAGCAC--
cru-miR157b         --UUGACAGAAGAUAGAGAGCAC--
cru-miR157a         --UUGACAGAAGAUAGAGAGCAC--
bra-miR157d         --UUGACAGAAGAUAGAGAGCAC--
bra-miR157c         --UUGACAGAAGAUAGAGAGCAC--
bra-miR157b         --UUGACAGAAGAUAGAGAGCAC--
bra-miR157a         --UUGACAGAAGAUAGAGAGCAC--
csi-miR156i-5p      --UUGACAGAAGAUAGAUAGCAC--
ptc-miR156l         --UUGACAGAAGAUGGAGAGCAC--
bol-miR157          --UUGACAGAAGAUAGAGAGCACU-
mtr-miR156g-5p      --UUGACAGAAGAUAGAGGGCAC--
csi-miR156g-5p      --UUGACGGAAGAUAGAGAGCAC--
mes-miR535c         --UUGAC-GACGAGAGAGAGCACA-
zos-miR156a         ---UGACAGAAGAGAGAGCGCACU-
ath-miR157c-3p      GCUCUCUAUACUUCUGUCACC----
aly-miR157c-3p      GCUCUCUAUACUUCUGUCACC----
                             *     *    *