TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

tae-miR1130b-3p

Organism

Triticum aestivum

Species

Mature miRNA Sequence(5'-3')

UCUUAUAUUAUGGGACGGAGG

miRBase

Precursor miRNA Sequence(5'-3')

AUUGUACUCCCUCCAUCCCACAAUAUAAGACGUUUUUGCAAACUACUUGAACAUCUUGUAUAAAACAGCUUGCCAAAACAUCUUAUAUUAUGGGACGGAGGGAGCACU

miRBase

Precursor miRNA Structure(5'-3') 

AUU  A        A     C         C     U    A  -AC   A     
   GU CUCCCUCC UCCCA AAUAUAAGA GUUUU GCAA CU   UUG ACAU 
   || |||||||| ||||| ||||||||| ||||| |||| ||   ||| ||| C
   CA GAGGGAGG AGGGU UUAUAUUCU CAAAA CGUU GA   AAU UGUG 
--U  C        C     A         A     C    C  CAA   A

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

tae-miR1120a         ACAUUCUUAUAUUAUGAGACGGAG-
hvu-miR1120          ACAUUCUUAUAUUAUGGGACGGAG-
tae-miR1120b-3p      ---UUCUUAUAUUGUGGGACAGAG-
tae-miR1130b-3p      ----UCUUAUAUUAUGGGACGGAGG
tae-miR1122c-3p      ----UCUAAUAUUAUGGGACGGAGG
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